View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_12 (Length: 393)
Name: NF6869A_low_12
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 27430274 - 27430654
Alignment:
| Q |
1 |
gtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctcagggctttgcaagattctacaagtatgatgggcatagcaggttgtt |
100 |
Q |
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| T |
27430274 |
gtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctcagagctttgcaagattctacaagtatgatgggcatagtaggttgtt |
27430373 |
T |
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| Q |
101 |
ttgtaacgaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttgatcatgtttgtgagtgcacctgtaatagttcctgcaaagc- |
199 |
Q |
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| T |
27430374 |
ttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttgatcatgtttgtgagtgcacctgtaatagttcctgcaaagca |
27430473 |
T |
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| Q |
200 |
-atataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaataattaacatgataatgtgttcaaatagtgaagttagtgcttaatta |
298 |
Q |
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| T |
27430474 |
tatataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaataattaacatgataatttgttcaaatagtgaagtttgtgcttaatta |
27430573 |
T |
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| Q |
299 |
aactcgtaaaannnnnnnnnnnnnnnccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctccattgatgtccatct |
385 |
Q |
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| T |
27430574 |
aactcgtaaaa------atatatataccttggaaaatcggtgtgcaagatctttttttgcccatactttctccattgatgaccatct |
27430654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 27447521 - 27447717
Alignment:
| Q |
1 |
gtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctcagggctttgcaagattctacaagtatgatgggcatagcaggttgtt |
100 |
Q |
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|||||| ||||| ||||||||||| || ||| |||| |||| | ||||||||||||| |||||||||||||||||||||||||| | | ||||||| |
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| T |
27447521 |
gtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgatggcctgaataggttgtc |
27447620 |
T |
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| Q |
101 |
ttgtaacgaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaaccttgatcatgtttgtgagtgcacctgtaatagttcctgcaaa |
197 |
Q |
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||| | |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
27447621 |
ctgtgaagaggtggatcctcttgaattctttggacttgttttattgctttgcaaccttgatcatttttgtgagtgcatctgtaatagttcctgcaaa |
27447717 |
T |
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