View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6869A_low_124 (Length: 231)

Name: NF6869A_low_124
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6869A_low_124
NF6869A_low_124
[»] chr4 (12 HSPs)
chr4 (80-197)||(46550706-46550823)
chr4 (80-187)||(17056615-17056722)
chr4 (80-194)||(47541809-47541925)
chr4 (80-187)||(41464802-41464911)
chr4 (80-187)||(52920087-52920197)
chr4 (87-182)||(15827131-15827229)
chr4 (80-178)||(47833504-47833603)
chr4 (80-188)||(36364868-36364972)
chr4 (80-187)||(39503504-39503615)
chr4 (80-187)||(20679841-20679951)
chr4 (90-175)||(46381481-46381568)
chr4 (80-152)||(42969971-42970043)
[»] chr1 (10 HSPs)
chr1 (80-187)||(16253029-16253136)
chr1 (80-187)||(24241478-24241585)
chr1 (80-187)||(41942781-41942888)
chr1 (80-187)||(21356794-21356901)
chr1 (80-187)||(34773420-34773528)
chr1 (80-187)||(39744169-39744276)
chr1 (89-193)||(38746028-38746133)
chr1 (80-187)||(2344969-2345077)
chr1 (109-187)||(48503922-48504000)
chr1 (85-187)||(7101359-7101464)
[»] chr3 (9 HSPs)
chr3 (80-187)||(44880254-44880361)
chr3 (80-191)||(1994850-1994961)
chr3 (80-187)||(22220210-22220318)
chr3 (80-186)||(2008400-2008508)
chr3 (80-192)||(22831174-22831286)
chr3 (80-187)||(39056875-39056981)
chr3 (111-187)||(26466362-26466438)
chr3 (80-167)||(28297695-28297782)
chr3 (130-187)||(45805583-45805640)
[»] chr7 (8 HSPs)
chr7 (80-191)||(8541427-8541539)
chr7 (80-187)||(34998528-34998637)
chr7 (80-187)||(10544991-10545100)
chr7 (108-187)||(39187986-39188065)
chr7 (80-187)||(45627414-45627524)
chr7 (130-182)||(32676800-32676852)
chr7 (141-197)||(15878797-15878853)
chr7 (80-139)||(40076693-40076753)
[»] chr8 (11 HSPs)
chr8 (80-191)||(42056676-42056787)
chr8 (80-199)||(30208187-30208307)
chr8 (92-191)||(39402038-39402140)
chr8 (80-192)||(5594779-5594891)
chr8 (80-186)||(1162117-1162222)
chr8 (80-187)||(40719895-40720005)
chr8 (80-192)||(35179155-35179268)
chr8 (80-190)||(31333162-31333273)
chr8 (80-169)||(42921385-42921474)
chr8 (80-143)||(30362018-30362082)
chr8 (87-187)||(36132676-36132776)
[»] chr5 (12 HSPs)
chr5 (80-187)||(33758794-33758901)
chr5 (86-168)||(23151436-23151518)
chr5 (80-192)||(2976446-2976556)
chr5 (80-178)||(34849451-34849550)
chr5 (80-177)||(30319817-30319915)
chr5 (80-187)||(20524604-20524711)
chr5 (80-187)||(10719746-10719854)
chr5 (80-167)||(37872201-37872291)
chr5 (150-190)||(37872302-37872342)
chr5 (82-194)||(8026460-8026577)
chr5 (80-179)||(3454259-3454358)
chr5 (80-138)||(42285218-42285277)
[»] chr2 (10 HSPs)
chr2 (80-187)||(3870024-3870135)
chr2 (80-187)||(11028779-11028887)
chr2 (94-187)||(36400857-36400952)
chr2 (80-193)||(28734070-28734183)
chr2 (80-187)||(37721449-37721557)
chr2 (80-187)||(38879517-38879625)
chr2 (80-187)||(3647418-3647526)
chr2 (80-186)||(30706149-30706258)
chr2 (80-187)||(6512079-6512191)
chr2 (80-141)||(3949317-3949378)
[»] scaffold0095 (1 HSPs)
scaffold0095 (92-191)||(35362-35464)
[»] chr6 (3 HSPs)
chr6 (80-187)||(2141240-2141348)
chr6 (80-192)||(7080148-7080262)
chr6 (93-187)||(25336928-25337023)
[»] scaffold0288 (1 HSPs)
scaffold0288 (108-187)||(18084-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (108-195)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (80-187)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 46550706 - 46550823
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  46550706 aataataaagagaaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatg 46550805  T
Q  180 gaagaatatctccttatt 197  Q
    ||||||||| || |||||    
T  46550806 gaagaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 17056722 - 17056615
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    ||||||||||||||||||||||||||  |||||| |||||||  |||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  17056722 aataataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgtgaccat 17056624  T
Q  179 ggaagaata 187  Q
    |||||||||    
T  17056623 ggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 47541809 - 47541925
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 177  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||| | |||| |||||||||||| |||||||| ||    
T  47541809 aataataagaaggaaattgataaaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatca 47541908  T
Q  178 tggaagaatatctcctt 194  Q
    || ||||||||||||||    
T  47541909 tgaaagaatatctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 41464802 - 41464911
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 177  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||  || ||  |||||||||||| |||||||||||    
T  41464802 aataataaagaagaaattgataaaaaagatgattgagtattttgaagagaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtgacca 41464901  T
Q  178 tggaagaata 187  Q
    || |||||||    
T  41464902 tgaaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 52920087 - 52920197
Alignment:
Q  80 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 176  Q
    |||||||||||| |||||||| |||||  ||||||||||||||  | |  ||||||||||  | | |||||| |||||||||||||||||||||||||||    
T  52920087 aataataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatctttttatttatatgtatttaaacattattgatttggtcttgtgacc 52920186  T
Q  177 atggaagaata 187  Q
    |||||||||||    
T  52920187 atggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 15827131 - 15827229
Alignment:
Q  87 aagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 182  Q
    ||||| |||||||| |||||  || ||||||||||| ||  ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827131 aagagaaaattgatgaaaaaaaataattgaatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 47833603 - 47833504
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 177  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| |||||    
T  47833603 aataataaagaggaaattgataaaa-taatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgacca 47833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 36364868 - 36364972
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||| ||||||| |||||||||||||| ||||    ||||||  ||||  || ||||||| ||||| | ||||||||||||||||||||||| |||||||    
T  36364868 aatagtaaagagaaaattgataaaaataatga----atattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgcgaccatg 36364963  T
Q  180 gaagaatat 188  Q
     || |||||    
T  36364964 caacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 39503504 - 39503615
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatga--ttgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgac 175  Q
    ||||||||||||||||||||||||||  |  |  || |||||||  | ||  ||||||||||||||  || |||||||| ||||||||| ||||||||||    
T  39503504 aataataaagaggaaattgataaaaaaaaaaaaattaaatattttaaagatcatctttttatgtgtatgtgttcaaacactattgatttagtcttgtgac 39503603  T
Q  176 catggaagaata 187  Q
    ||| ||||||||    
T  39503604 catagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 20679841 - 20679951
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt---tatgtgtgtattcaaacattattgatttggtcttgtgacc 176  Q
    ||||||||||||||||||||||||||  || |||||||||||  | ||  || ||||   | ||||||| | |||||| |||||||||| ||||| ||||    
T  20679841 aataataaagaggaaattgataaaaaaaataattgaatattttaaagaccattttttttatgtgtgtgtgtccaaacactattgatttgatcttgagacc 20679940  T
Q  177 atggaagaata 187  Q
    ||| |||||||    
T  20679941 atgaaagaata 20679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 46381568 - 46381481
Alignment:
Q  90 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatg--tgtgtattcaaacattattgatttggtcttgtgac 175  Q
    ||||||||||||||||  |||||||||| |||  |||| ||||| ||||||  |||||  ||||||| |||| |||||||||||||||    
T  46381568 aggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 42970043 - 42969971
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaa 152  Q
    |||||||||||  |||||||||||||  | ||||||||||||  |||| |||||||||||  |||| ||||||    
T  42970043 aataataaagataaaattgataaaaaaaaagattgaatattttaaggataatctttttatacgtgtgttcaaa 42969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 16253136 - 16253029
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  16253136 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatg 16253037  T
Q  180 gaagaata 187  Q
    ||||||||    
T  16253036 gaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 24241585 - 24241478
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  24241585 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatg 24241486  T
Q  180 gaagaata 187  Q
    ||||||||    
T  24241485 gaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 41942888 - 41942781
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  41942888 aataataaggaggaaattgataaaaatgatgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatg 41942789  T
Q  180 gaagaata 187  Q
     |||||||    
T  41942788 aaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 21356901 - 21356794
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 21356802  T
Q  180 gaagaata 187  Q
     |||||||    
T  21356801 aaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 34773420 - 34773528
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 177  Q
    ||||||||| |||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||||||||| ||    
T  34773420 aataataaa-aggaaattaataaaaaatatgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatca 34773518  T
Q  178 tggaagaata 187  Q
    ||||||||||    
T  34773519 tggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 39744169 - 39744276
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||||||| |||||||||  |||||||| ||||  ||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 39744268  T
Q  180 gaagaata 187  Q
    ||||||||    
T  39744269 gaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  89 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 187  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  188 tctcct 193  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 2345077 - 2344969
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 177  Q
    ||||| || ||||||||||||||||| ||||||||||| |||  | || ||| ||||||||||||  ||| |||||||||||||||||||||||||||||    
T  2345077 aataagaaggaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtgacca 2344979  T
Q  178 tggaagaata 187  Q
     |||||||||    
T  2344978 aggaagaata 2344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 48504000 - 48503922
Alignment:
Q  109 tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 187  Q
    ||||||| ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48504000 tgattgagtattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 7101359 - 7101464
Alignment:
Q  85 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatgg 180  Q
    ||||||||||||||||||||   ||||||||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| |||||    
T  7101359 taaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgg 7101457  T
Q  181 aagaata 187  Q
     ||||||    
T  7101458 gagaata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 44880361 - 44880254
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  44880361 aataataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatg 44880262  T
Q  180 gaagaata 187  Q
     |||||||    
T  44880261 aaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 1994850 - 1994961
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||     
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccata 1994949  T
Q  180 gaagaatatctc 191  Q
    | ||||||||||    
T  1994950 gtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 22220318 - 22220210
Alignment:
Q  80 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||| |||| |||||||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccat 22220219  T
Q  179 ggaagaata 187  Q
    |||||||||    
T  22220218 ggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 2008508 - 2008400
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 177  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||| | |||| ||||||||||||||||||||| ||    
T  2008508 aataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatca 2008409  T
Q  178 tggaagaat 186  Q
    |||||||||    
T  2008408 tggaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 22831174 - 22831286
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  22831174 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 22831273  T
Q  180 gaagaatatctcc 192  Q
    |||||||||||||    
T  22831274 gaagaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 39056875 - 39056981
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||| ||| ||| |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| || ||||    
T  39056875 aatattaaggagaaaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatg 39056973  T
Q  180 gaagaata 187  Q
    ||||||||    
T  39056974 gaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 26466362 - 26466438
Alignment:
Q  111 attgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 187  Q
    |||||||||||  |  ||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  26466362 attgaatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 28297782 - 28297695
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggt 167  Q
    |||||||||||||||||||||||||   ||||| |||||| |  |||||||||||||||| | | | | ||||| |||||||||||||    
T  28297782 aataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 45805583 - 45805640
Alignment:
Q  130 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 187  Q
    |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805583 atctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 8541539 - 8541427
Alignment:
Q  80 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    |||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8541539 aataataaggaggaaattgataaaaaataatgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccat 8541440  T
Q  179 ggaagaatatctc 191  Q
      |||||||||||    
T  8541439 aaaagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 34998637 - 34998528
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 177  Q
    |||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||    
T  34998637 aataataaggagaaaattgataaaaataatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgacca 34998538  T
Q  178 tggaagaata 187  Q
    ||||||||||    
T  34998537 tggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 10545100 - 10544991
Alignment:
Q  80 aataataaagaggaaattgataaa--aatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacca 177  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||  |  | ||||||||||||||||| | |||| | |||||||| |||||||||| |     
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtgatcg 10545001  T
Q  178 tggaagaata 187  Q
    ||||||||||    
T  10545000 tggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 39187986 - 39188065
Alignment:
Q  108 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 187  Q
    ||||||||||||||  ||||  ||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||    
T  39187986 atgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 45627414 - 45627524
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtcttgtgacc 176  Q
    ||||||| | ||||||||||||||||  |||||| |||||||  |||| ||| ||||| |||||||| | ||||| || ||||||||||||| |||||||    
T  45627414 aataatataaaggaaattgataaaaaaaatgattaaatattttaaggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgacc 45627513  T
Q  177 atggaagaata 187  Q
    |||||||||||    
T  45627514 atggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  130 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 182  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  141 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 197  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 40076693 - 40076753
Alignment:
Q  80 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttat 139  Q
    |||||||| |||||||||||| ||||| |||||||||||||||  |  |||||||||||||    
T  40076693 aataataaggaggaaattgataaaaaaagatgattgaatatttttaaaagaatctttttat 40076753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 42056787 - 42056676
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||| ||||||||||||| |||||||||||||||  | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatg 42056688  T
Q  180 gaagaatatctc 191  Q
    ||||||||||||    
T  42056687 gaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 30208307 - 30208187
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 177  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |  || | |||||||||||||||||||||| ||||||    
T  30208307 aataataaggaggaaattgataaaaaagatgattgaatattt-gaggagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgacca 30208209  T
Q  178 tggaagaatatctccttattct 199  Q
    |||||||||| |||| ||||||    
T  30208208 tggaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 39402038 - 39402140
Alignment:
Q  92 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 188  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 39402137  T
Q  189 ctc 191  Q
    |||    
T  39402138 ctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 5594891 - 5594779
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  5594891 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 5594792  T
Q  180 gaagaatatctcc 192  Q
    |||||||||||||    
T  5594791 gaagaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 1162117 - 1162222
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    ||||||||||||||||||||||| || ||  ||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||| ||||    
T  1162117 aataataaagaggaaattgataagaaagac-attgaatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatg 1162215  T
Q  180 gaagaat 186  Q
    || ||||    
T  1162216 gacgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 40719895 - 40720005
Alignment:
Q  80 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 176  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||  ||||||| | ||||||||||| ||||  |||| |||||    
T  40719895 aataataaggaggaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgacc 40719994  T
Q  177 atggaagaata 187  Q
    |||||||||||    
T  40719995 atggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 35179268 - 35179155
Alignment:
Q  80 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    ||||||||  ||||||||||||||||  | | ||||||||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||    
T  35179268 aataataagaaggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccat 35179169  T
Q  179 ggaagaatatctcc 192  Q
    | ||||||| ||||    
T  35179168 gaaagaatacctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 31333162 - 31333273
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 177  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||  || | ||||||||||  ||||||||  |||||||| |||||||||||||||||| |    
T  31333162 aataataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgacta 31333260  T
Q  178 tggaagaatatct 190  Q
    |||||||||||||    
T  31333261 tggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 42921474 - 42921385
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtct 169  Q
    |||||||| || |||||||||||||| ||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921474 aataataaggatgaaattgataaaaaagatgattgattattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 30362018 - 30362082
Alignment:
Q  80 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgt 143  Q
    |||||||| || |||||||||||||| | || ||||||||||| ||||||||| |||||||||||    
T  30362018 aataataaggacgaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 36132776 - 36132676
Alignment:
Q  87 aagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 186  Q
    ||||||||||| |||||||  |||||| |||||||  |  |  |||||||||||||||||| |||| | |||| |||| |||||||||| || |||||||    
T  36132776 aagaggaaattaataaaaaaaatgattaaatattttaaaaaccatctttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaat 36132677  T
Q  187 a 187  Q
    |    
T  36132676 a 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 33758901 - 33758794
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatg 33758802  T
Q  180 gaagaata 187  Q
    ||||||||    
T  33758801 gaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  86 aaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 168  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 2976446 - 2976556
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    |||| |||||| ||||||||||||||  ||||||||||||||  ||||  |||||||||||||||  | |||||| ||||||||||||||| ||||||||    
T  2976446 aatattaaagaagaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtg--tccaaacactattgatttggtcttatgaccatg 2976543  T
Q  180 gaagaatatctcc 192  Q
    |||||||| ||||    
T  2976544 gaagaatacctcc 2976556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 34849550 - 34849451
Alignment:
Q  80 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    |||||||| ||| |||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |||||||    
T  34849550 aataataaggagaaaattgataaaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 30319915 - 30319817
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 177  Q
    ||||| || ||||||||||||||||| |||||||||||||||  | |||||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  30319915 aataagaaggaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 20524604 - 20524711
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    ||||||||||||||||||||||||||  ||||||||||||||  |  |  ||||||| |||||||| | |||||| ||||||||| || |||||| ||||    
T  20524604 aataataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatg 20524703  T
Q  180 gaagaata 187  Q
    ||||||||    
T  20524704 gaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 10719854 - 10719746
Alignment:
Q  80 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    |||| ||||||| |||||||||||||  | |||||||||||||  ||||  || ||||||||||||| | |||||| |||| |||||||||| |||||||    
T  10719854 aatagtaaagagaaaattgataaaaaaaaatgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccat 10719755  T
Q  179 ggaagaata 187  Q
    |||||||||    
T  10719754 ggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 37872201 - 37872291
Alignment:
Q  80 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggt 167  Q
    |||||||| |||||||||||||||||  ||||||||||||||| || |||||||||||||  ||||||| | |||| ||||||||||||||    
T  37872201 aataataaggaggaaattgataaaaaaagatgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  150 aaacattattgatttggtcttgtgaccatggaagaatatct 190  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 8026577 - 8026460
Alignment:
Q  82 taataaagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacc 176  Q
    ||||||||||||||||||||   ||||  ||||||||||||||  | ||  |||||||||||||| |   | |||||| ||||||||||||||||||||     
T  8026577 taataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgact 8026478  T
Q  177 atggaagaatatctcctt 194  Q
    || |||||||| ||||||    
T  8026477 atagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 179
Target Start/End: Complemental strand, 3454358 - 3454259
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 179  Q
    ||||||||| | |||||||||||||| |||||||||||||||  || ||||||||| ||| | |||    ||| |||||||||||| |||||| ||||||    
T  3454358 aataataaaaaagaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaaccatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 42285277 - 42285218
Alignment:
Q  80 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatcttttta 138  Q
    |||||||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  42285277 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaatcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 3870135 - 3870024
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta----tgtgtgtattcaaacattattgatttggtcttgtgac 175  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||    ||||||| |  ||||||||||||||||||||||||||    
T  3870135 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgac 3870036  T
Q  176 catggaagaata 187  Q
    ||||||||||||    
T  3870035 catggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 11028887 - 11028779
Alignment:
Q  80 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    |||||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||| ||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgat 11028788  T
Q  179 ggaagaata 187  Q
    |||||||||    
T  11028787 ggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  94 aattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaata 187  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 28734070 - 28734183
Alignment:
Q  80 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    ||||||||||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccgt 28734168  T
Q  179 ggaagaatatctcct 193  Q
    ||||||||| |||||    
T  28734169 ggaagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 37721557 - 37721449
Alignment:
Q  80 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    |||||||| |||||||||||||||||  | ||||||||||||| || ||||||||||||||| | || | |||| |||||||||||||||||||||||||    
T  37721557 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccat 37721458  T
Q  179 ggaagaata 187  Q
    |||||||||    
T  37721457 ggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 38879625 - 38879517
Alignment:
Q  80 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    |||||| | ||| |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||    
T  38879625 aataatgaggagaaaattgataaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtgactat 38879526  T
Q  179 ggaagaata 187  Q
    |||||||||    
T  38879525 ggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 3647526 - 3647418
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 177  Q
    ||||| || ||| ||||||||||||| |||||||||||||||  | |||||| |||||||||||  || |||||||||||||||||||||||||||||||    
T  3647526 aataagaaggagaaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgacca 3647428  T
Q  178 tggaagaata 187  Q
     |||||||||    
T  3647427 aggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 30706149 - 30706258
Alignment:
Q  80 aataataaagaggaaattgataaaaatga-----tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtga 174  Q
    |||| |||||||||||||||||||||  |     |||||||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||||||||    
T  30706149 aatagtaaagaggaaattgataaaaaaaaaaaaatgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttgtga 30706246  T
Q  175 ccatggaagaat 186  Q
    ||||| ||||||    
T  30706247 ccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 6512079 - 6512191
Alignment:
Q  80 aataataaagaggaaattgataaaaatga---tgattgaatattt-agaggagaatctttttatgtgtgtatt--caaacattattgatttggtcttgtg 173  Q
    ||||||||||||||||||||||||||  |   ||||||||||||| ||||   | ||||||||||||||| |   |||||| ||||||||||||||||||    
T  6512079 aataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttca-tctttttatgtgtgtgtgtccaaacactattgatttggtcttgtg 6512177  T
Q  174 accatggaagaata 187  Q
    ||||||||| ||||    
T  6512178 accatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 3949317 - 3949378
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt 141  Q
    ||||||||| | ||||||||||||||  |||||||||||||| ||||||||  |||||||||    
T  3949317 aataataaaaaagaaattgataaaaaaaatgattgaatattttgaggagaaattttttatgt 3949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 35464 - 35362
Alignment:
Q  92 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 188  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 35365  T
Q  189 ctc 191  Q
    |||    
T  35364 ctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 2141240 - 2141348
Alignment:
Q  80 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 178  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||||||    
T  2141240 aataataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccat 2141339  T
Q  179 ggaagaata 187  Q
    |||||||||    
T  2141340 ggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 7080262 - 7080148
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 177  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| || ||||||||||||||||  |||| | |||||||||||||||||||| ||||||||    
T  7080262 aatattaaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgacca 7080163  T
Q  178 tggaagaatatctcc 192  Q
    | |||||||| ||||    
T  7080162 tagaagaatacctcc 7080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  93 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaata 187  Q
    ||||||||||||| |||||||||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||||||||| |||||||||    
T  25336928 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaata 25337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  108 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 187  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  108 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 195  Q
    |||||||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 57 - 165
Alignment:
Q  80 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 177  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| ||    
T  57 aataataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatca 155  T
Q  178 tggaagaata 187  Q
    ||||||||||    
T  156 tggaagaata 165  T

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