View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_132 (Length: 230)
Name: NF6869A_low_132
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_132 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 21706471 - 21706242
Alignment:
| Q |
1 |
tcaactctgatagacttctagattcctccatggagaatagagatttcagattttcacaacgagaaacacttaaatgcttgagacattggagactcggagt |
100 |
Q |
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| T |
21706471 |
tcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacgtaaaacttgtaaatgcttgagacattggagactctgagt |
21706372 |
T |
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| Q |
101 |
ctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaaatgaaaa |
200 |
Q |
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| T |
21706371 |
ctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaaatgaaaa |
21706272 |
T |
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| Q |
201 |
aggttgatgaaattataaagcatatttggg |
230 |
Q |
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| T |
21706271 |
aggttgatgaaattataaagcatatttggg |
21706242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 21712993 - 21713191
Alignment:
| Q |
1 |
tcaactctgatagacttctagattcctccatggagaatagagatttcagattttcacaacgagaaacacttaaatgcttgagacattggagactcggagt |
100 |
Q |
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| T |
21712993 |
tcaactctggtagacttctagattccttcatggagaacaaagatttcaaattttcacaatcacctacttttaaatactggagacattggagactccatat |
21713092 |
T |
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| Q |
101 |
ctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaaatgaaa |
199 |
Q |
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| T |
21713093 |
ctgtcttggagctgtaggatcctgccatgatatggatttcaactgaggcaaaacatgtaaatacaactccagttttaagggcaagttctgaacatgaaa |
21713191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 21709373 - 21709236
Alignment:
| Q |
11 |
tagacttctagattcctccatggagaatagagatttcagattttcacaacgagaaacacttaaatgcttgagacattggagactcggagtctgtcttgga |
110 |
Q |
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| T |
21709373 |
tagacttctagattccttcacggagaatagagatttcagattttcacaatcaccaacatttcaacgctggagacattggagactccgaatttgtcttgga |
21709274 |
T |
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| Q |
111 |
gttgtaggacccaaccatgatatggagttcaactgagg |
148 |
Q |
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| T |
21709273 |
gttataagacccaaccatgatatggcgttcaattgagg |
21709236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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