View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_135 (Length: 229)
Name: NF6869A_low_135
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_135 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 42638289 - 42638065
Alignment:
| Q |
5 |
ctttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatcttcagatgtgcggtctgttggctaagtttgctct |
104 |
Q |
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| T |
42638289 |
ctttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatcttcagatgtgcggtctgttggctaagtttgctct |
42638190 |
T |
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| Q |
105 |
tgttcgcgacactgctaacgctgcatgagtaggtcctaagtgcaactgatacacatcattagtttttccggctttatggtagtgagaatgctgtactgat |
204 |
Q |
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| T |
42638189 |
tgttcgcgacactgctaacgctgcatgagtaggtcctaagtgcaactgatacacatcattagtttttccggctttatggtagtgagaatgctgtactgat |
42638090 |
T |
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| Q |
205 |
gaaacatgtagattttaaatcctga |
229 |
Q |
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| T |
42638089 |
gaaacatgtagattttaaatcctga |
42638065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 42566560 - 42566686
Alignment:
| Q |
103 |
cttgttcgcgacactgctaacgctgcatgagtaggtcctaagtgcaactgatacacatcattagtttttccggctttatggtagtgagaatgctgtactg |
202 |
Q |
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| T |
42566560 |
cttgttcgcgacactgctaaagctgcatgagtaggtcctaagtgcaactgatacacatcattactttttctggttttatggtagtgagaatgttgtactg |
42566659 |
T |
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| Q |
203 |
atgaaacatgtagattttaaatcctga |
229 |
Q |
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| T |
42566660 |
atgaaacatgtagattttaaattctga |
42566686 |
T |
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