View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6869A_low_136 (Length: 229)
Name: NF6869A_low_136
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_136 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 29090229 - 29090003
Alignment:
| Q |
3 |
ttatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaa |
102 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29090229 |
ttatgcagatatcgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
29090130 |
T |
|
| Q |
103 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
29090129 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtcaa |
29090030 |
T |
|
| Q |
203 |
actcatgtaatttaagttttgatttga |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
29090029 |
actcatgtaatttaagttttgatttga |
29090003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5933528 - 5933756
Alignment:
| Q |
1 |
tattatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtc |
100 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5933528 |
tattatgcagatatcgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaagccccaatccctcaaataagtgtc |
5933627 |
T |
|
| Q |
101 |
aacatatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtc |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
5933628 |
aacatatttacccaacatgtctcccatgtgacctatgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtc |
5933727 |
T |
|
| Q |
201 |
aaactcatgtaatttaagttttgatttga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5933728 |
aaactcatgtaatttaagttttgatttga |
5933756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 5935934 - 5935708
Alignment:
| Q |
3 |
ttatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaa |
102 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5935934 |
ttatgcagatatcgaatcataacatcatttgccttggcattatccaccgttatcgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
5935835 |
T |
|
| Q |
103 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | || |
|
|
| T |
5935834 |
catatttacccaacatgtctcccgtgtgacccatgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacgatgaa |
5935735 |
T |
|
| Q |
203 |
actcatgtaatttaagttttgatttga |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5935734 |
actcatgtaatttaagttttgatttga |
5935708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 4316536 - 4316753
Alignment:
| Q |
3 |
ttatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaa |
102 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4316536 |
ttatgcaaatattgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
4316635 |
T |
|
| Q |
103 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaa |
202 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
4316636 |
catatttacccaacatgtct---------cctgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtcaa |
4316726 |
T |
|
| Q |
203 |
actcatgtaatttaagttttgatttga |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4316727 |
actcatgtaatttaagttttgatttga |
4316753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 16046138 - 16045912
Alignment:
| Q |
3 |
ttatgcaaatatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaa |
102 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
16046138 |
ttatgcagatatcgaatcataacatcatttgtcttggcattacccaccgttaccgttaatatcttaccatacaaccctcaatccctcaaataagtgtcaa |
16046039 |
T |
|
| Q |
103 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
16046038 |
catatttacccaacatgtctcccgtgtgacttgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcagcaaaatgaacggtcaa |
16045939 |
T |
|
| Q |
203 |
actcatgtaatttaagttttgatttga |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
16045938 |
actcatgtaatttaagttttgatttga |
16045912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 10143060 - 10142850
Alignment:
| Q |
12 |
tatcgaatcatcacatcatttgccttggcattatccaccgtcaccgttaatatcttaccatacaatccccaatccctcaaataagtgtcaacatatttac |
111 |
Q |
| |
|
||||||||||| || ||||||| |||| |||| |||||||| |||||||| || ||||| | ||| || |||| ||| ||||| |||||||||||||||| |
|
|
| T |
10143060 |
tatcgaatcataacttcatttgacttgacattgtccaccgttaccgttaagattttaccgttcaaccctcaattccttaaatatgtgtcaacatatttac |
10142961 |
T |
|
| Q |
112 |
ccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgtagcttcaattcatgatcaacaaaatgaacggtcaaactcatgta |
211 |
Q |
| |
|
||||||| ||| | ||||||||| ||||||| ||||||||||| ||||||| ||| || ||||| ||| || |||||||||||| ||| |||||| || |
|
|
| T |
10142960 |
ccaacatatcttcggtgtgacccatgatttgacaaaagttgataattttctcgtgcagtttcaactcaccattaacaaaatgaacaatcagactcatata |
10142861 |
T |
|
| Q |
212 |
atttaagtttt |
222 |
Q |
| |
|
| |||| |||| |
|
|
| T |
10142860 |
acttaaatttt |
10142850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University