View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_138 (Length: 229)
Name: NF6869A_low_138
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_138 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 18163953 - 18164180
Alignment:
| Q |
2 |
caagagagaggtagagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctctaattatccactttttcaccattcatagacg |
101 |
Q |
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| T |
18163953 |
caagagagaggtagagacgccacatctccacccaaaatcttaatacattaggtgtatgagtcacctctctaattatccactttttcaccattcatagacg |
18164052 |
T |
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| Q |
102 |
atctgaacttaaccactcacaagtgaaccgagtattttattccaatttttcatttaggttagcagtgatacaatgcatgtgaaaatgaagcaaaacaacc |
201 |
Q |
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| T |
18164053 |
atgtgaacttaaccactcacacgtgaaccgagtattttattccaatttttcatttaggttagcagtgatacaatgcatgtgaaaatgaagcaaaacaacc |
18164152 |
T |
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| Q |
202 |
agagctagcaacaagtttgattattatg |
229 |
Q |
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| T |
18164153 |
agagctagcaacaagtttgattattatg |
18164180 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 11200038 - 11199982
Alignment:
| Q |
15 |
gagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctct |
71 |
Q |
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| T |
11200038 |
gagacgccacatctccacccaaaaccttaaggcattaggcatatgagtcacctctct |
11199982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 28296070 - 28296126
Alignment:
| Q |
15 |
gagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctct |
71 |
Q |
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| T |
28296070 |
gagacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctct |
28296126 |
T |
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