View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_145 (Length: 223)
Name: NF6869A_low_145
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_145 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 1831763 - 1831604
Alignment:
| Q |
19 |
atgttcaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaatgaaatattttaact |
118 |
Q |
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| T |
1831763 |
atgttgaatctctttaaaatatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaact |
1831664 |
T |
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| Q |
119 |
ttcccaaatcttccatctcaaattctctcatcatttgtcttttgaaatttttctatctatg |
179 |
Q |
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| T |
1831663 |
ttcccaaatcagtcatctcaaattctgtcatcatttgtcttttg-aatttttctgtctatg |
1831604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 9817070 - 9816931
Alignment:
| Q |
25 |
aatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaatgaaatattttaactttccca |
124 |
Q |
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| T |
9817070 |
aatctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttccca |
9816971 |
T |
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| Q |
125 |
aatcttccatctcaaattctctcatcatttgtcttttgaa |
164 |
Q |
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| T |
9816970 |
aaccagtcatgtcaaactctttcatcatttgtcttttgaa |
9816931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 15490481 - 15490592
Alignment:
| Q |
53 |
tcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaatgaaatattttaactttcccaaatcttccatctcaaattctctcatcat |
152 |
Q |
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| T |
15490481 |
tcttctgatgcatccctaaaccttttaaagtttaattgaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcat |
15490580 |
T |
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| Q |
153 |
ttgtcttttgaa |
164 |
Q |
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| T |
15490581 |
ttgtcttatgaa |
15490592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 16944109 - 16944223
Alignment:
| Q |
50 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaatgaaatattttaactttcccaaatcttccatctcaaattctctcat |
149 |
Q |
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| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
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| Q |
150 |
catttgtcttttgaa |
164 |
Q |
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| T |
16944209 |
catttgtcttttgaa |
16944223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 17014774 - 17014888
Alignment:
| Q |
50 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaatgaaatattttaactttcccaaatcttccatctcaaattctctcat |
149 |
Q |
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| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
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| Q |
150 |
catttgtcttttgaa |
164 |
Q |
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| T |
17014874 |
catttgtcttttgaa |
17014888 |
T |
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