View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_154 (Length: 216)
Name: NF6869A_low_154
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_154 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29090062 - 29090277
Alignment:
| Q |
1 |
ggtgattgtggcatacatatcaagcaaacggaaaatcttctccggtgtcaatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagct |
100 |
Q |
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| T |
29090062 |
ggtgattgtggcatacatatcaagcaaacggaaaatcttctccggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagct |
29090161 |
T |
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| Q |
101 |
ccatctcttgaaatttcaccaaaacaagcttctctgatggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactg |
200 |
Q |
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| T |
29090162 |
ccatctcttgaaatttcaccaaaacaagcttctctgatggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactg |
29090261 |
T |
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| Q |
201 |
agatcttaactgcctc |
216 |
Q |
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|||||||||||||||| |
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| T |
29090262 |
agatcttaactgcctc |
29090277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29104323 - 29104538
Alignment:
| Q |
1 |
ggtgattgtggcatacatatcaagcaaacggaaaatcttctccggtgtcaatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagct |
100 |
Q |
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||||||||| || |||||||||||||| || |||||||||||||| | ||||||||||||| ||||||| ||||||||||| ||| || | | ||||| |
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| T |
29104323 |
ggtgattgtagcgtacatatcaagcaagcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaatagct |
29104422 |
T |
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| Q |
101 |
ccatctcttgaaatttcaccaaaacaagcttctctgatggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactg |
200 |
Q |
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| T |
29104423 |
ccatccttagaaatctcagcaaaacaagcttctttgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactg |
29104522 |
T |
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| Q |
201 |
agatcttaactgcctc |
216 |
Q |
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| T |
29104523 |
agatcttaaccgcctc |
29104538 |
T |
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