View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6869A_low_161 (Length: 207)
Name: NF6869A_low_161
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_161 |
 | |
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| [»] chr6 (10 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 6589560 - 6589360
Alignment:
| Q |
7 |
gggagaagatttccctagttttgtcacttaaatgaatatcccccagatgaatctcttgaagtcgtgtgcagttttctaccacatgtttcactccctcctc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6589560 |
gggagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttttctaccacatgtttcactccctcctc |
6589461 |
T |
|
| Q |
107 |
cgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcagatatagtgttttatcattaacatttgtatttgacaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6589460 |
cgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcagatatagtgttttatcattaacatttgtatttgacaag |
6589361 |
T |
|
| Q |
207 |
t |
207 |
Q |
| |
|
| |
|
|
| T |
6589360 |
t |
6589360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 7994417 - 7994222
Alignment:
| Q |
9 |
gagaagatttccctagttttgtcacttaaatgaatatcccccagatgaatctcttgaagtcgtgtgcagttttctaccacatgtttcactccctcctccg |
108 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||| |||||| | || |||||||| ||| | ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7994417 |
gagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcgg |
7994318 |
T |
|
| Q |
109 |
tgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcagatatagtgttttatcattaacatttgtatttgaca |
204 |
Q |
| |
|
| |||| ||||||||||| |||| ||| ||||| ||| || |||||| |||||||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
7994317 |
taacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgaca |
7994222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 6415891 - 6416028
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag |
169 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | || ||||||| || ||||| || |||| ||| ||||| |||||| ||||||| |||||||||| |
|
|
| T |
6415891 |
gtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcac |
6415990 |
T |
|
| Q |
170 |
atatagtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
6415991 |
atagagagttttatcattaacctttgtatttgacaagt |
6416028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 19632314 - 19632405
Alignment:
| Q |
20 |
cctagttttgtcacttaaatgaatatcccccagatgaatctcttgaagtcgtgtgcagttttctaccacatgtttcactccctcctccgtga |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||| | ||| || |||||||||||||||| ||||||||||||| ||| |||| |
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|
| T |
19632314 |
cctagttttgtcacttgaatgaatatcccccaaataaatctccttcagttgtttgcagttttctaccacgtgtttcactcccttctctgtga |
19632405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 14818307 - 14818444
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag |
169 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| ||| ||||||| ||||||| || |||| ||||| ||| |||||| |||||| || ||||||| |
|
|
| T |
14818307 |
gtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatcat |
14818406 |
T |
|
| Q |
170 |
atatagtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
||| ||||||| || || ||| ||||||||||| |||| |
|
|
| T |
14818407 |
ataaagtgtttcattatcaacctttgtatttgataagt |
14818444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 6394736 - 6394926
Alignment:
| Q |
17 |
ttccctagttttgtcacttaaatgaatatcccccagatgaatctcttgaagtcgtgtgcagttttctaccacatgtttcactccctcctccgtgacataa |
116 |
Q |
| |
|
||||||| ||| |||||||| || ||||||||||| || ||||||| | | |||||||||||||||||||||||| ||| |||| || ||||||| |
|
|
| T |
6394736 |
ttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacattt |
6394835 |
T |
|
| Q |
117 |
ttacaaagttgaagtgataattgcataagccctatacaattttttgagatcagatatagtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
|||||| | |||| |||||||| |||||| |||||| |||||||||| | | || |||| ||||| ||| ||||||||||||||| |
|
|
| T |
6394836 |
ttacaattatcaagttgtaattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagt |
6394926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 14820618 - 14820755
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag |
169 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||| ||||||| |||||| || |||| ||||| ||| |||||| |||||| || ||||||| |
|
|
| T |
14820618 |
gtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttggagatcat |
14820717 |
T |
|
| Q |
170 |
atatagtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
||| ||||||| || || ||| ||||||||||| |||| |
|
|
| T |
14820718 |
ataaagtgtttcattatcaacctttgtatttgataagt |
14820755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 6603373 - 6603324
Alignment:
| Q |
73 |
tgcagttttctaccacatgtttcactccctcctccgtgacataattacaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| |||||||||| |||| |
|
|
| T |
6603373 |
tgcagttttctaccacatgtttcactcctttctctgtgacataataacaa |
6603324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 10579925 - 10579879
Alignment:
| Q |
56 |
aatctcttgaagtcgtgtgcagttttctaccacatgtttcactccct |
102 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
10579925 |
aatctctctaagttgtgtgcagttttctaccacatgtttaactccct |
10579879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 6594780 - 6594739
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactccctcctccgtga |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
6594780 |
gtgtgcagttttctaccacatgtttggctccctcctctgtga |
6594739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 13470906 - 13470769
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag |
169 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || ||||||| || |||||||| |||| ||| ||||| |||||| |||||| |||||||||| |
|
|
| T |
13470906 |
gtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcat |
13470807 |
T |
|
| Q |
170 |
atatagtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
13470806 |
atagagtgttttatcattaacctttgtatttgacaagt |
13470769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 51764614 - 51764477
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcag |
169 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| |||||| || |||| ||| ||| ||| ||||| |||||| |||||| ||||||||| |
|
|
| T |
51764614 |
gtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgc |
51764515 |
T |
|
| Q |
170 |
atatagtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
||| ||||||||||||| ||| |||||| |||||||| |
|
|
| T |
51764514 |
atagagtgttttatcatcaacttttgtaaatgacaagt |
51764477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 51121067 - 51121037
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
51121067 |
gtgtgcagttttctaccacatgtttcactcc |
51121037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 10614521 - 10614655
Alignment:
| Q |
73 |
tgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcagata |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||| || | |||||| |||| ||| ||||| |||||| |||| || || ||||||| ||| |
|
|
| T |
10614521 |
tgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttcgagatcacata |
10614620 |
T |
|
| Q |
173 |
tagtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |
|
|
| T |
10614621 |
gagtgttttatcattaaccttcgtatttgacaagt |
10614655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 15092375 - 15092190
Alignment:
| Q |
20 |
cctagttttgtcacttaaatgaatatcccccagatgaatctcttgaagtcgtgtgcagttttctaccacatgtttcactccctcctccgtgacataatta |
119 |
Q |
| |
|
||||||||||||||||| ||| |||| || || || ||||||| | | ||||||||||||||| |||||||||||||||| | || ||||||| || | |
|
|
| T |
15092375 |
cctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataa |
15092276 |
T |
|
| Q |
120 |
caaagttgaagtgataattgcataagccctatacaattttttgagatcagatatagtgttttatcattaacatttgtatttgacaa |
205 |
Q |
| |
|
|||| || |||| ||| ||||| |||||| |||||| ||||||||| ||| ||||||||||||||||| ||||| | |||||| |
|
|
| T |
15092275 |
caaaattcaagtaatagttgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaa |
15092190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 27922435 - 27922570
Alignment:
| Q |
72 |
gtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcagat |
171 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||| || ||||||| || |||||| |||| || |||||| |||| | |||||||||| || |
|
|
| T |
27922435 |
gtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatat |
27922534 |
T |
|
| Q |
172 |
atagtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
| |||| || ||||| ||||||||||| |||||||| |
|
|
| T |
27922535 |
aaagtgcttcatcatcaacatttgtatatgacaagt |
27922570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 41901704 - 41901572
Alignment:
| Q |
75 |
cagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcagatata |
174 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||| ||||||| ||||||||| |||| || ||| || |||| | |||||||||| ||| | |
|
|
| T |
41901704 |
cagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaa |
41901605 |
T |
|
| Q |
175 |
gtgttttatcattaacatttgtatttgacaagt |
207 |
Q |
| |
|
||| || ||||| ||| ||||||| |||||||| |
|
|
| T |
41901604 |
gtgcttcatcatcaacttttgtatatgacaagt |
41901572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 53761943 - 53761899
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactccctcctccgtgacat |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
53761943 |
gtgtgcagttttcttccacatgtttcactcccttgtccgtgacat |
53761899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 546839 - 546882
Alignment:
| Q |
71 |
tgtgcagttttctaccacatgtttcactccctcctccgtgacat |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
546839 |
tgtgcagttttctagcacatgtttcactcccttctctgtgacat |
546882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 55505279 - 55505235
Alignment:
| Q |
70 |
gtgtgcagttttctaccacatgtttcactccctcctccgtgacat |
114 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| ||| ||||||| |
|
|
| T |
55505279 |
gtgtgcagttttctaacacgtgtttcactcccttctctgtgacat |
55505235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 45245264 - 45245227
Alignment:
| Q |
65 |
aagtcgtgtgcagttttctaccacatgtttcactccct |
102 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
45245264 |
aagttgtgtgcaattttctaccacatgtttcactccct |
45245227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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