View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_169 (Length: 201)
Name: NF6869A_low_169
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_169 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 45037460 - 45037360
Alignment:
| Q |
82 |
atgcattccattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattg |
181 |
Q |
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| T |
45037460 |
atgcattgcattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagggtgacgccataacatagcaagaacaagattg |
45037361 |
T |
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| Q |
182 |
t |
182 |
Q |
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| T |
45037360 |
t |
45037360 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 45944023 - 45944078
Alignment:
| Q |
104 |
gcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgcca |
159 |
Q |
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| T |
45944023 |
gcacaatagtgaacaacttgaactttctcaagctcaacattctcaggatgacgcca |
45944078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 20395365 - 20395277
Alignment:
| Q |
94 |
acttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgt |
182 |
Q |
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| T |
20395365 |
acttaccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcaggatgacgccacaacatggccagcacaagattgt |
20395277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 37686915 - 37686983
Alignment:
| Q |
97 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacat |
165 |
Q |
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| T |
37686915 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacat |
37686983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 37698603 - 37698535
Alignment:
| Q |
97 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacat |
165 |
Q |
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| T |
37698603 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacat |
37698535 |
T |
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