View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_2 (Length: 564)
Name: NF6869A_low_2
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 51 - 493
Target Start/End: Complemental strand, 1045813 - 1045396
Alignment:
| Q |
51 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcacacacacagaat |
150 |
Q |
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| T |
1045813 |
ataagttatagccacaattcaagtcatatcaactccttaaacaaactacttttccattttctttaaattttaacaaaaatttcagtcacacaca--gaat |
1045716 |
T |
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| Q |
151 |
gtttgccaaaaataacaaataacaagataaattgaaaaaattaggagcacaaaacgtgattacaatgagttatttattatacttgttaatcgaatagatt |
250 |
Q |
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| T |
1045715 |
gtttgccaaaaataacagataacaagataaattgaaaaaattaggagcacaa-------------tgagttatttattatacttgttaatcgaatagatt |
1045629 |
T |
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| Q |
251 |
caaacagtgaagaaaagatcgtaccgtatagtgagagggtttcgttataattgaattgttttcgcgaagggtagaagcttcgatgatgcacttatgcaga |
350 |
Q |
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| T |
1045628 |
caaacagtgaagaaaagatcgtaccttatagtgagagggtgtcgttataattgaattgttttcgccatgggtagaagcttcgatggt----------ata |
1045539 |
T |
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| Q |
351 |
acctaaaatgaaactgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaat |
450 |
Q |
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| T |
1045538 |
accgaaaatgaaactgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaat |
1045439 |
T |
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| Q |
451 |
taatattttattgattgtaaataatgtaacaattttatagagt |
493 |
Q |
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| T |
1045438 |
taatattttattgattgtaaataatgtaacaattttatagagt |
1045396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 1039345 - 1039303
Alignment:
| Q |
244 |
atagattcaaacagtgaagaaaagatcgtaccgtatagtgaga |
286 |
Q |
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| T |
1039345 |
atagattcaaacagtgaagaaaagaacgtaccgtatcgtgaga |
1039303 |
T |
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