View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_25 (Length: 356)
Name: NF6869A_low_25
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 351
Target Start/End: Complemental strand, 34959277 - 34958927
Alignment:
| Q |
6 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttggaaagcatttttggaa |
105 |
Q |
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| T |
34959277 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttgaaaagcattttttgaa |
34959178 |
T |
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| Q |
106 |
gccaatttctttgaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
205 |
Q |
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| T |
34959177 |
gccaatttctaagaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
34959078 |
T |
|
| Q |
206 |
t----gttgatgaggcgcacttgttaatatggcatgaactttt--tatacaatcctgaatcaatgactttaaccatatgaaatattggaatgtgagttgc |
299 |
Q |
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| T |
34959077 |
tgtacgttgatgaggcgcacttgttaatatgtcctgcactttttgtgtacaatcctgaatcaatgac-ttaaccatatgaaattttgaaatgtaagttgc |
34958979 |
T |
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| Q |
300 |
tttcggaatatggtgatactatgaaacacaagctcatacacgaacacgaaac |
351 |
Q |
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| T |
34958978 |
ttttggaatatggtaatactatgaaacacaaactcatacacgaacacgaaac |
34958927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 351
Target Start/End: Original strand, 3921320 - 3921657
Alignment:
| Q |
6 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttggaaagcatttttggaa |
105 |
Q |
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| T |
3921320 |
acaagagtgaaatgcagatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagctttccagattttgaaaagcattttctgaa |
3921419 |
T |
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| Q |
106 |
gccaatttctttgaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
205 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3921420 |
accaatttctttgaactgtgagagatgattaatataggttcaatgtgcacatgaggctggatcttagacttgtttcacagttacaacaaatatgtactat |
3921519 |
T |
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| Q |
206 |
tgttgatgaggcgcacttgttaatatggcatgaactttt--tatacaatcctgaatcaatgactttaaccatatgaaatattggaatgtgagttgctttc |
303 |
Q |
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|||| ||||||||||||| | | |||||| | ||||||||| |||||||||||||||||||||||||| | |||||||| || ||||| |
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| T |
3921520 |
tgtt----------acttgttaatatgtcctacactttttgtgtacaatcctcaatcaatgactttaaccatatgaaatttccgaatgtgaattactttc |
3921609 |
T |
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| Q |
304 |
ggaatatggtgatactatgaaacacaagctcatacacgaacacgaaac |
351 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3921610 |
ggaatatggtgatactatgaaacacaaactcatacacgaacacgaaac |
3921657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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