View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_31 (Length: 342)
Name: NF6869A_low_31
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_31 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 2819719 - 2819396
Alignment:
| Q |
19 |
acatcatagaaatttggtttccctttatcaccttgaagtgtaatctcaactaatgtagctggaggtgttccaatgagtccattgcaagctaatcttccat |
118 |
Q |
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| T |
2819719 |
acatcatagaaatttggtctccctttatcaccttgaagtgtgatttcaactaatgtagctggaggtgttccaatgagtccattgcaagctaatcttccat |
2819620 |
T |
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| Q |
119 |
cacaatccccagtttcacaagatggtttccaattatttgaagcaaaattgcaacctgttctagcccaaattctaccactccatgaccatggtgctagaat |
218 |
Q |
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| T |
2819619 |
cacaatccccagtttcacaagatggtttccaattatttgaagcaaaattgcaacctgttctagcccaaattctaccactccatgaccatggtgctagaat |
2819520 |
T |
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| Q |
219 |
tttctttgtttggcctgaaggaaggtagaatccaccatctgctataattggttgaccagcgtttggtgctgttgctggccatattggaaagggacattta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
2819519 |
tttctttgtttggcctgaaggaaggtagaatccaccatctgctataattggttgaccagtgtttggtgctgttgcaggccatattggaaagggacattta |
2819420 |
T |
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| Q |
319 |
ttgtgtatatagaatgttgcttga |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
2819419 |
ttgtgtatatagaatgttgcttga |
2819396 |
T |
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