View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6869A_low_40 (Length: 308)

Name: NF6869A_low_40
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6869A_low_40
NF6869A_low_40
[»] chr4 (1 HSPs)
chr4 (1-296)||(31097602-31097897)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 31097602 - 31097897
Alignment:
Q  1 aatatcattactattagaccagcctcctcacattctcagttctcaaatcaagccttgatccacttgccttgctgtctccatgatgtggatttactttgta 100  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31097602 aatatcattactattaaaccagccacctcacattctcagttctcaaatcaagccttgatccacttgccttgctgtctccatgatgtggatttactttgta 31097701  T
Q  101 aaggcatcaactggagaaagcttaacaacgtaacattctcattatcgctgctatagccaccactacctctaccccaaccaatccgtctcgcattctcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31097702 aaggcatcaactggagaaagcttaacaacgtaacattctcattatcgctgctatagccaccactacctctaccccgaccaatccgtctcgcattctcaat 31097801  T
Q  201 gcttccattacctttaaactatcttgtagcaattactgtgcttggaaacaccaatcacctacttttttctctgcgatccaaataatgggccatatt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31097802 gcttccattacctttaaactatcttgtagcaattactgtgcttggaaacaccaatcacctacttttttctctgcgatccaaataatgggccatatt 31097897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University