View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6869A_low_41 (Length: 306)

Name: NF6869A_low_41
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6869A_low_41
NF6869A_low_41
[»] chr1 (6 HSPs)
chr1 (1-139)||(16799552-16799690)
chr1 (179-306)||(16799385-16799512)
chr1 (227-301)||(6243178-6243252)
chr1 (50-131)||(1298624-1298705)
chr1 (50-123)||(21448734-21448807)
chr1 (235-271)||(19709880-19709916)
[»] chr4 (3 HSPs)
chr4 (208-301)||(7354289-7354382)
chr4 (50-131)||(9739989-9740070)
chr4 (51-131)||(21166552-21166632)
[»] chr7 (3 HSPs)
chr7 (50-126)||(21228407-21228483)
chr7 (70-126)||(21229062-21229118)
chr7 (75-139)||(17887791-17887855)
[»] chr8 (1 HSPs)
chr8 (220-271)||(7635692-7635743)
[»] chr5 (4 HSPs)
chr5 (50-126)||(32415904-32415980)
chr5 (213-271)||(15989512-15989569)
chr5 (219-271)||(18787523-18787575)
chr5 (51-131)||(23032613-23032693)
[»] scaffold0468 (1 HSPs)
scaffold0468 (50-139)||(2242-2331)
[»] scaffold0059 (1 HSPs)
scaffold0059 (50-131)||(64017-64098)
[»] chr2 (2 HSPs)
chr2 (67-126)||(8445526-8445586)
chr2 (228-260)||(38715403-38715435)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 16799690 - 16799552
Alignment:
Q  1 aatatagcaaactaaccttggataaaatcatgtattcccttttctctatgaaaactagaattacctcactcgatatgaaaatattataaaatgactcaaa 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16799690 aatatagcaaattaaccttggataaaatcatgtattcccttttctctatgaaaactagaattacctcactcgatatgaaaatattacaaaatgactcaaa 16799591  T
Q  101 aatcataggcaattgctctaaaactcttctatctaggat 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16799590 aatcataggcaattgctctaaaactcttctatctaggat 16799552  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 179 - 306
Target Start/End: Complemental strand, 16799512 - 16799385
Alignment:
Q  179 cgtaagatcatatgtcatcatttgtcatattactgttgtggagctaccgatgacctaacctaataacgttgcatgttaagtattgtgattgtatcgtgag 278  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16799512 cgtaagatcacatgtcatcatttgtcatattactgttgtggagctaccgatgacctaacctagtaacgttgcatgttaagtattgtgattgtatcgtgag 16799413  T
Q  279 aggacgtcttcacatgcttaacacatga 306  Q
    |||||||||||| |||||||||||||||    
T  16799412 aggacgtcttcatatgcttaacacatga 16799385  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 6243178 - 6243252
Alignment:
Q  227 gatgacctaacctaataacgttgcatgttaagtattgtgattgtatcgtgagaggacgtcttcacatgcttaaca 301  Q
    |||||| ||||||| ||||||||  ||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  6243178 gatgacataacctagtaacgttgtgtgttaagtatattgattgtatcctgagaggacgtcttcacatgcttaaca 6243252  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 1298624 - 1298705
Alignment:
Q  50 gaaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactcttcta 131  Q
    ||||||||||||||| | |||| |||||||||||| | |||||  |||  ||||||||| |||||| |||||||||| ||||    
T  1298624 gaaaactagaattacatgactcaatatgaaaatatgacaaaatatctctgaaatcatagacaattgttctaaaactcctcta 1298705  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 21448807 - 21448734
Alignment:
Q  50 gaaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaa 123  Q
    ||||||||||||||| | |||| | ||||||| |||| |||||| | | ||||||||||||||||| |||||||    
T  21448807 gaaaactagaattacatgactcaaaatgaaaacattacaaaatgtcccgaaaatcataggcaattgttctaaaa 21448734  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 19709880 - 19709916
Alignment:
Q  235 aacctaataacgttgcatgttaagtattgtgattgta 271  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  19709880 aacctagtaatgttgcatgttaagtattgtgattgta 19709916  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 7354382 - 7354289
Alignment:
Q  208 ttactgttgtggagctaccgatgacctaacctaataacgttgcatgttaagtattgtgattgtatcgtgagaggacgtcttcacatgcttaaca 301  Q
    ||||| ||||||||||   ||||||||||||||  || ||||||||||||||| ||||||| || |  ||||||||||||||||||||||||||    
T  7354382 ttactattgtggagctgttgatgacctaacctagaaatgttgcatgttaagtactgtgattataccccgagaggacgtcttcacatgcttaaca 7354289  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 9740070 - 9739989
Alignment:
Q  50 gaaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactcttcta 131  Q
    ||||||||||||||| | |||||| || |||| |||| ||||   | ||||||||||| ||||||| |||||||||| ||||    
T  9740070 gaaaactagaattacatgactcgaaataaaaacattacaaaacatcccaaaaatcatatgcaattgttctaaaactcctcta 9739989  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 21166632 - 21166552
Alignment:
Q  51 aaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactcttcta 131  Q
    |||||||||||||| | |||||| |||||||||||| |||||| |    |||||||| ||||||  |||||||||| ||||    
T  21166632 aaaactagaattacattactcgaaatgaaaatattacaaaatgtcatgtaaatcatatgcaatttttctaaaactcctcta 21166552  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 21228407 - 21228483
Alignment:
Q  50 gaaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactc 126  Q
    |||||||| |||||| | | |||| ||||||| |||| |||||| | |||||| |||||||||||||||||||||||    
T  21228407 gaaaactataattacatgattcgaaatgaaaacattaaaaaatgtcccaaaaaccataggcaattgctctaaaactc 21228483  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 21229062 - 21229118
Alignment:
Q  70 tcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactc 126  Q
    |||| ||||||| |||| |||||| | |||||| |||||||||||||||||||||||    
T  21229062 tcgaaatgaaaacattaaaaaatgtcccaaaaaccataggcaattgctctaaaactc 21229118  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 17887855 - 17887791
Alignment:
Q  75 atgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactcttctatctaggat 139  Q
    ||||||| |||| |||||| | | |||| ||||||||||| ||||||||||| ||||||| ||||    
T  17887855 atgaaaacattacaaaatgtccctaaaaccataggcaatttctctaaaactcctctatcttggat 17887791  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 7635692 - 7635743
Alignment:
Q  220 agctaccgatgacctaacctaataacgttgcatgttaagtattgtgattgta 271  Q
    |||||| |||||||||||||||||| |||||||||||| |||||| ||||||    
T  7635692 agctactgatgacctaacctaataatgttgcatgttaaatattgtaattgta 7635743  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 32415980 - 32415904
Alignment:
Q  50 gaaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactc 126  Q
    ||||||||||||||| | ||| || ||||||| |||| |||||| | |||||| |||||| ||||| ||||||||||    
T  32415980 gaaaactagaattacatgacttgaaatgaaaacattacaaaatgtcccaaaaaccataggaaattgttctaaaactc 32415904  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 15989569 - 15989512
Alignment:
Q  213 gttgtggagctaccgatgacctaacctaataacgttgcatgttaagtattgtgattgta 271  Q
    ||||| ||||||| ||||||| |||||| ||| |||||||||||| |||||||||||||    
T  15989569 gttgtagagctactgatgacc-aacctagtaatgttgcatgttaaatattgtgattgta 15989512  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 18787523 - 18787575
Alignment:
Q  219 gagctaccgatgacctaacctaataacgttgcatgttaagtattgtgattgta 271  Q
    ||||||| | |||||||||||| ||| ||||||||||||||| ||| ||||||    
T  18787523 gagctactggtgacctaacctactaatgttgcatgttaagtactgttattgta 18787575  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 23032613 - 23032693
Alignment:
Q  51 aaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactcttcta 131  Q
    |||||||||||||| | | | || ||||||  |||| |||||| ||| |||| ||||| ||||||||||||||||| ||||    
T  23032613 aaaactagaattacatgaattgaaatgaaagaattacaaaatgtctcgaaaaccatagtcaattgctctaaaactcctcta 23032693  T

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Target: scaffold0468 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 2242 - 2331
Alignment:
Q  50 gaaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactcttctatctaggat 139  Q
    ||||||||||||||| | |||||| ||||||| ||||||||||  | |||||| | | | |||||| |||||||||  ||||||| ||||    
T  2242 gaaaactagaattacatgactcgaaatgaaaacattataaaatatcccaaaaaacgttgacaattgttctaaaacttctctatcttggat 2331  T

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Target: scaffold0059 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 64098 - 64017
Alignment:
Q  50 gaaaactagaattacctcactcgatatgaaaatattataaaatgactcaaaaatcataggcaattgctctaaaactcttcta 131  Q
    ||||||||||| ||| | |||||| | ||||| ||||||||||| | |||||| || || |||||| |||||||||| ||||    
T  64098 gaaaactagaaatacatgactcgaaaagaaaacattataaaatgtcccaaaaaccaaagacaattgttctaaaactcctcta 64017  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 8445586 - 8445526
Alignment:
Q  67 cactcgatatgaaaatattataaaatgactc-aaaaatcataggcaattgctctaaaactc 126  Q
    ||||||| ||||||| |||| |||||| ||| |||||| |||| |||||||||||||||||    
T  8445586 cactcgaaatgaaaacattacaaaatgtctcgaaaaataatagacaattgctctaaaactc 8445526  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 38715403 - 38715435
Alignment:
Q  228 atgacctaacctaataacgttgcatgttaagta 260  Q
    ||||||||||||||||| |||||||||||||||    
T  38715403 atgacctaacctaataatgttgcatgttaagta 38715435  T

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