View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_43 (Length: 300)
Name: NF6869A_low_43
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_43 |
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| [»] chr2 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 5826975 - 5827274
Alignment:
| Q |
1 |
gatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcca |
100 |
Q |
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| T |
5826975 |
gatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcca |
5827074 |
T |
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| Q |
101 |
acatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtgg |
200 |
Q |
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| T |
5827075 |
acatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctctcttccaggtgg |
5827174 |
T |
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| Q |
201 |
ttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatactt |
300 |
Q |
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| T |
5827175 |
ttacaatacttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatactt |
5827274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 5768522 - 5768821
Alignment:
| Q |
1 |
gatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcca |
100 |
Q |
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| T |
5768522 |
gatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcca |
5768621 |
T |
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| Q |
101 |
acatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtgg |
200 |
Q |
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| T |
5768622 |
acatagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctcttccaaatgg |
5768721 |
T |
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| Q |
201 |
ttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatactt |
300 |
Q |
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| T |
5768722 |
ttatgacacctctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccccaaaatactt |
5768821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 5829926 - 5829742
Alignment:
| Q |
1 |
gatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcca |
100 |
Q |
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|||||| || || |||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5829926 |
gatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcgtgcta |
5829827 |
T |
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| Q |
101 |
acatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataag |
185 |
Q |
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| T |
5829826 |
acataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataag |
5829742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 5794793 - 5794866
Alignment:
| Q |
219 |
cgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatactt |
300 |
Q |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatg--------ttgcaagagctatattgaaagaccctagaatactt |
5794866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 29327440 - 29327141
Alignment:
| Q |
1 |
gatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcca |
100 |
Q |
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|||||| || ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29327440 |
gatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgcgcca |
29327341 |
T |
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| Q |
101 |
acatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtgg |
200 |
Q |
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| T |
29327340 |
acatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcctgatgg |
29327241 |
T |
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| Q |
201 |
ttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatactt |
300 |
Q |
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||| | || || || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| ||||||| |
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| T |
29327240 |
ttatgacacttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatactt |
29327141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 3431268 - 3431216
Alignment:
| Q |
235 |
ttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaa |
287 |
Q |
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| T |
3431268 |
ttatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaa |
3431216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 17872447 - 17872391
Alignment:
| Q |
213 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgc |
269 |
Q |
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| T |
17872447 |
ggtaggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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