View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_45 (Length: 296)
Name: NF6869A_low_45
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_45 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 28764554 - 28764838
Alignment:
| Q |
1 |
tcaatctacggcagtcaagggtgattgatgtgttactcagtaaacgacatatggataagggtacgaaacaacgattatcatcatatgagagtacatatgt |
100 |
Q |
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| T |
28764554 |
tcaatctacggcagtcaagggtgattgatgtgttactcagtaaacgacatatggataagggtacgaaccaacgattatcatcgtatgagagtacatatgt |
28764653 |
T |
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| Q |
101 |
tagatatgttagtaatagttgcctttttcgt---tgtgattgctgaaggtgtaattcaacgaaggtgggactggagatgagggtgttccaagacttgcaa |
197 |
Q |
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| T |
28764654 |
tag---------tagtagttgcctttttcgtcgttgtgattgctgaaggtgtaattcaacgaaggtgggaccggagatgagggtgttccaagacttgcaa |
28764744 |
T |
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| Q |
198 |
acgcactttagttgcataagagatttaacaggaagcaataataagacctgagtgaacaggtcatcatggaggattaacggtgatattgttcgac |
291 |
Q |
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| T |
28764745 |
acgcactttagttgcataagagatttaacaggaagcaataataagacctgggtgaacaggtcatcatggaggattaacggtgataatcttcgac |
28764838 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 5437679 - 5437741
Alignment:
| Q |
170 |
ggagatgagggtgttccaagacttgcaaacgcactttagttgcataagagatttaacaggaag |
232 |
Q |
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| T |
5437679 |
ggagatgagggtgttccatgacttgcaaacacacttcatttgcataagatatttaacaggaag |
5437741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 553804 - 553743
Alignment:
| Q |
171 |
gagatgagggtgttccaagacttgcaaacgcactttagttgcataagagatttaacaggaag |
232 |
Q |
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| T |
553804 |
gagatgagggtgttccatgatttgcaaacacacttcattcgcataagatattcaacaggaag |
553743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 18325484 - 18325428
Alignment:
| Q |
176 |
gagggtgttccaagacttgcaaacgcactttagttgcataagagatttaacaggaag |
232 |
Q |
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| T |
18325484 |
gagggtgttccatgatttacaacagcactttagttgcataagagatttcacaggaag |
18325428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 161148 - 161095
Alignment:
| Q |
170 |
ggagatgagggtgttccaagacttgcaaacgcactttagttgcataagagattt |
223 |
Q |
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| T |
161148 |
ggagattagggttttccaagacttgcaaacacacttcatctgcataagagattt |
161095 |
T |
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