View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_48 (Length: 295)
Name: NF6869A_low_48
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 7949889 - 7950158
Alignment:
| Q |
20 |
catcagtgttgcatttaatccaattatgaataggagggtgccagagaacctccgcagtttttggagcattaggagtgtgagtttcaattctgaaagcttt |
119 |
Q |
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| T |
7949889 |
catcagtgttgcatttaatccaattatgaataggagggtgccagagatcctccacaatttttggagcattaggaatgtgagtttcaattctgaaagcttt |
7949988 |
T |
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| Q |
120 |
caaaaccacaaagtctctgattgttgggctagttactgcagatataaggttaccagataggttcacacttgcaatgatcatgtttttagctgcaactaaa |
219 |
Q |
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| T |
7949989 |
caaaaccacaaagtctctgattgctgggctagttactgcagatataaggttaccagataggttcacacttgcaatgatcatgtttttagctgcaactaaa |
7950088 |
T |
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| Q |
220 |
tttggtttgacattgttgaatttgaagttgtttctagagaaccatatgacatttatggtattgataaaag |
289 |
Q |
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| T |
7950089 |
tttggtttgacattgttgaatttgaagttgtttctagagaaccatatgacatttatggtattgataaaag |
7950158 |
T |
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