View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_50 (Length: 289)
Name: NF6869A_low_50
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 11637075 - 11637362
Alignment:
| Q |
1 |
tcatttacaatttaccgacaatacgttgttatttgggtgtaaaagttggacgaat---gttagagccttatatactattttgtatttgtttgaggcaatg |
97 |
Q |
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| T |
11637075 |
tcatttacaatttatcgacaatacgttgttatttgggcgtaaaagttggacgaatattgttagagccttatgtactattttgtatttgtttgaggcaatg |
11637174 |
T |
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| Q |
98 |
tctgatttaaaagtgaacttttcataagagtttattggttggtgttagtgttaataatatttggttaactgaggcggcttcagtgttgaatgcaaaattg |
197 |
Q |
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| T |
11637175 |
tctgatttaaaagtgaacttt-cataagagtttattggttggtgttagtgttaatgatatttggttaactgaggcggctgcggtgttgaatgcaaaattg |
11637273 |
T |
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| Q |
198 |
ggaagttaccttttgttttttgggaatgtt---------taatccgagacgctagacgaatgttagagccttgtgtactgttttatatt |
277 |
Q |
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| T |
11637274 |
ggaagttaccttttgttttttgggcatgttgattgggggtaatccgagacgctggacgaatgttagagccttgtgtactgttttgtatt |
11637362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 11637326 - 11637432
Alignment:
| Q |
47 |
tggacgaatgttagagccttatatactattttgtatttgt---ttgaggcaatgtctgatttaaaagtgaacttttcataagagtttattggttggtgtt |
143 |
Q |
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| T |
11637326 |
tggacgaatgttagagccttgtgtactgttttgtatttgtttattaaggcaatgtctagtttaaaagtgaac-tttcttaaaagtttgttggttggtgtt |
11637424 |
T |
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| Q |
144 |
agtgttaa |
151 |
Q |
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| T |
11637425 |
aatgttaa |
11637432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26132487 - 26132273
Alignment:
| Q |
1 |
tcatttacaatttaccgacaatacgttgttatttgggtgtaaaagttggacgaatgttagagccttatatactattttgtatttgtttgaggcaatgtct |
100 |
Q |
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| T |
26132487 |
tcatttgcaatttgctgataataccttgttatttgagagtaaaagatggatgaatgttagaatcttctgtgctattttgtatttgtttgaggcaatgtct |
26132388 |
T |
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| Q |
101 |
gatttaaaagtgaacttttcataagagtttattggttggtgttagtgttaataatatttggttaactgaggcggcttcagtgttgaa-tgcaaaattggg |
199 |
Q |
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| T |
26132387 |
gggttgaaggtgaa-tttccataagagcttgttggtttgtgttaatgtaaatgattcttggttaaccgaggcggcttcggtgttgaattgcaaaattgag |
26132289 |
T |
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| Q |
200 |
aagttaccttttgttt |
215 |
Q |
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| T |
26132288 |
aagttaccttttgttt |
26132273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 7616032 - 7616154
Alignment:
| Q |
21 |
atacgttgttatttgggtgtaaaagttggacgaatgttagagccttatatactattttgtatttgtttgaggcaatgtctgatttaaaagtgaacttttc |
120 |
Q |
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|||| |||||||||| | ||||||||||||| || ||| |||| || | ||| |||||||||||||||||| |||||| |||||||| ||| || | |
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| T |
7616032 |
atacattgttatttgagagtaaaagttggacaaacgtttgagctttgcacacttttttgtatttgtttgaggatatgtcttgcttaaaagtaaac-ttcc |
7616130 |
T |
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| Q |
121 |
ataagagtttattggttggtgtta |
144 |
Q |
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||||||| || ||||||||||||| |
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| T |
7616131 |
ataagagcttgttggttggtgtta |
7616154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 41352262 - 41352395
Alignment:
| Q |
81 |
atttgtttgaggcaatgtctgatttaaaagtgaacttttcataagagtttattggttggtgttagtgttaataatatttggttaactgaggcggcttcag |
180 |
Q |
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|||||||||||| |||||||| ||||||| || ||||||||||||||| | ||||| |||| | | ||| || |||||||| ||||||||| || | |
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| T |
41352262 |
atttgtttgaggaaatgtctggtttaaaa--taaattttcataagagtttgctcgttggcgttaatatcaatgattcttggttaaatgaggcggcatcgg |
41352359 |
T |
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| Q |
181 |
tgttgaa-tgcaaaattgggaagttaccttttgttt |
215 |
Q |
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| T |
41352360 |
tattgaatttcaaaattgggaagcttccatttgttt |
41352395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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