View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_51 (Length: 288)
Name: NF6869A_low_51
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_51 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 44821890 - 44821618
Alignment:
| Q |
17 |
catcaagcaattttggtcaatgtatacgatgtcacgaattctactaatcccctaatcatgtatggcaaccaatacgaagaaggtgatgtttctcttgtcc |
116 |
Q |
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| T |
44821890 |
catcaagcaattttggtcaatgtatatgatgtcacgaactcttctgatcccctaatcatgtatggcaaccaatacgaagaaggtgatgtttctcttgtcc |
44821791 |
T |
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| Q |
117 |
atgaaagtaagcttgaatttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacattttctggaactga-t |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44821790 |
atgaaagtaagcttgattttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacattttctggaactgact |
44821691 |
T |
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| Q |
216 |
ttcggcattttgtcagcagaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaa |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821690 |
ttcggcattttgtcagcagaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaa |
44821618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 35 - 288
Target Start/End: Original strand, 28129733 - 28129987
Alignment:
| Q |
35 |
aatgtatacgatgtcacgaattctactaatcccctaatcatgtatggcaaccaatacgaagaaggtgatgtttctcttgtccatgaaagtaagcttgaat |
134 |
Q |
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|||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28129733 |
aatgtatatgatgtcacgaactctactgatcccctaatcatgtatggcaaccaatacgaagaaggtgatgtttctcttgtccatgaaagtaagcttgatt |
28129832 |
T |
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| Q |
135 |
ttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacattttctggaactga-tttcggcattttgtcagca |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28129833 |
ttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacattttctggaactgactttcggcattttgtcagca |
28129932 |
T |
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| Q |
234 |
gaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaa |
288 |
Q |
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| T |
28129933 |
gaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaa |
28129987 |
T |
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