View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6869A_low_56 (Length: 282)

Name: NF6869A_low_56
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6869A_low_56
NF6869A_low_56
[»] chr1 (5 HSPs)
chr1 (37-282)||(9804675-9804920)
chr1 (9-152)||(9817550-9817693)
chr1 (16-155)||(9817438-9817577)
chr1 (37-145)||(9817341-9817448)
chr1 (213-282)||(9817777-9817846)
[»] scaffold0432 (3 HSPs)
scaffold0432 (9-159)||(11558-11708)
scaffold0432 (216-282)||(11788-11854)
scaffold0432 (37-155)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (213-282)||(42778832-42778900)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 37 - 282
Target Start/End: Original strand, 9804675 - 9804920
Alignment:
Q  37 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 136  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9804675 tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga 9804774  T
Q  137 catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9804775 catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt 9804874  T
Q  237 tcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaat 282  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||    
T  9804875 tcatgaaagttcaacctcgtttcattatttgggcaagaaaggtaat 9804920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
Q  9 tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc 108  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||  |||||||| |||||    
T  9817550 tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc 9817649  T
Q  109 tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa 152  Q
    ||||||||| || |||  ||||||||||||||||||||||||||    
T  9817650 tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa 9817693  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
Q  16 gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc 115  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||  ||| | |||||||||||||||    
T  9817438 gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc 9817537  T
Q  116 tagcaccatcactgagatcgacatcgatcagaaaaaagaa 155  Q
    || ||||||   ||||||||||||| |||| | |||||||    
T  9817538 taccaccataggtgagatcgacatcaatcaaacaaaagaa 9817577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
Q  37 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 136  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||  ||||| |||||||||||||| || ||||||| ||| ||||||    
T  9817341 tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga 9817439  T
Q  137 catcgatca 145  Q
    |||||||||    
T  9817440 catcgatca 9817448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 9817777 - 9817846
Alignment:
Q  213 tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaat 282  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9817777 tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaat 9817846  T

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Target: scaffold0432 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 11558 - 11708
Alignment:
Q  9 tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc 108  Q
    |||||| |||||  ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || |||||   ||| | ||||||    
T  11558 tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc 11657  T
Q  109 tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat 159  Q
    |||||| || ||||||| |||||||| ||||||||  ||||||||||||||    
T  11658 tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat 11708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 11788 - 11854
Alignment:
Q  216 ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  11788 ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaat 11854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 11467 - 11585
Alignment:
Q  37 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 136  Q
    ||||||||||||||||||| |||||| ||||| || | ||| | |||||||||||   || || ||||||||||||| ||| ||| | | ||||||||||    
T  11467 tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga 11566  T
Q  137 catcgatcagaaaaaagaa 155  Q
    ||| ||||| | |||||||    
T  11567 cattgatcaaacaaaagaa 11585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 42778900 - 42778832
Alignment:
Q  213 tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaat 282  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||| | ||| ||||||||||||||    
T  42778900 tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaat 42778832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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