View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6869A_low_58 (Length: 278)
Name: NF6869A_low_58
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_58 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 5995953 - 5996062
Alignment:
| Q |
166 |
gtgcagcgtcctcctttctacaattttaagatggggattcctttggctgctaaacgtgcttttaagctttctactgttgctttcattttttctgctatat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
5995953 |
gtgcagcgtcctcctttctacaattttaagatggggattcctttggctgctaaacgtgcttttaagctttccactgttgctttcattttttctgctattt |
5996052 |
T |
|
| Q |
266 |
tcttggagat |
275 |
Q |
| |
|
| |||||||| |
|
|
| T |
5996053 |
tattggagat |
5996062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5995788 - 5995887
Alignment:
| Q |
1 |
tcaatatttccaatcataaataactctctttcagtcaaaaccaattctatataaccaatttattcaaaattaatttttgtgactgctgaaccaagcatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5995788 |
tcaatatttccaatcataaataactctcttttagtcaaaaccaattctatataaccaatttattcaaaattaatttttgtgactgctgaaccaagcatac |
5995887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University