View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_67 (Length: 263)
Name: NF6869A_low_67
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 11387142 - 11386888
Alignment:
| Q |
1 |
tcaaaaccactattacaaatcaaaagaaagtgattgacaaacatatatcgtctttcttacaccctacagacaattatggaaccaaggtgatcggatttga |
100 |
Q |
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| T |
11387142 |
tcaaaaccactattacaaatcaaaagaaagtgattgacaaacatatgtcgtctttcttacaccctacagacaattatgtaaccaaggtgatcggatttga |
11387043 |
T |
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| Q |
101 |
taccgagtggcgtaaaattatccgtaa-tgatcatgatgaaaccaattcccggaccaaaccgggaactcttcaactttgtgatggacattcatgtcttat |
199 |
Q |
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| T |
11387042 |
taccgagtggcgtaaaattatcggtaaatgatcatgatgaaaccaattcccagaccaaaccgggaactcttcaactttgtgatggacattcatgtcttat |
11386943 |
T |
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| Q |
200 |
tattgagttacattgtcggcataaggatgttcccctttctctgcttaatattctt |
254 |
Q |
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| T |
11386942 |
tattgagttacattgtcggcataaggatgttcccctttctctgcttaattttctt |
11386888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 11393136 - 11392924
Alignment:
| Q |
1 |
tcaaaaccactattacaaatcaaaagaaagtgattgacaaacatatatcgtctttcttacaccctacagacaattatggaaccaaggtgatcggatttga |
100 |
Q |
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| T |
11393136 |
tcaaaaccaccattacagatcaaaagaaagtgattgacgaacatatatcgtctttcttacgccctacagacaatcatggaaccaaggtgatcggatttga |
11393037 |
T |
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| Q |
101 |
taccgagtggcgtaaaattatccgtaatgatcatgatgaaaccaattcccggaccaaaccgggaactcttcaactttgtgatggacattcatgtcttatt |
200 |
Q |
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| T |
11393036 |
tactgagtggcgtaaaattatcgataaggatcaagatggaaccaattcccggaccaaaccgggaactattcaactttgtgatggacattcgtgtcttatt |
11392937 |
T |
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| Q |
201 |
attgagttacatt |
213 |
Q |
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| T |
11392936 |
attgagttacatt |
11392924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 17198613 - 17198494
Alignment:
| Q |
25 |
agaaagtgattgacaaacatatatcgtctttcttacaccctacagacaattatggaaccaaggtgatcggatttgataccgagtggcgtaaaattatccg |
124 |
Q |
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||||| |||||||| | |||||||| |||||||||| |||||| ||||| | ||||| ||||| || || ||||||||||||||||| ||||||| |
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| T |
17198613 |
agaaattgattgacgatcatatatcatctttcttacgccctaccaacaatcacggaacgaaggttattgggattgataccgagtggcgtccaattatcta |
17198514 |
T |
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| Q |
125 |
taatgatcatgatgaaacca |
144 |
Q |
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||| |||| |||||||||| |
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| T |
17198513 |
taacaatcacgatgaaacca |
17198494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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