View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6869A_low_72 (Length: 259)

Name: NF6869A_low_72
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6869A_low_72
NF6869A_low_72
[»] chr6 (21 HSPs)
chr6 (1-252)||(6589108-6589359)
chr6 (1-258)||(6416029-6416286)
chr6 (1-243)||(7119220-7119462)
chr6 (1-243)||(7131698-7131940)
chr6 (1-241)||(6426574-6426814)
chr6 (1-241)||(6432224-6432464)
chr6 (1-256)||(6410069-6410324)
chr6 (1-241)||(10579532-10579772)
chr6 (1-241)||(6394927-6395167)
chr6 (1-196)||(7994023-7994218)
chr6 (66-239)||(8913783-8913955)
chr6 (1-241)||(6423280-6423520)
chr6 (1-241)||(6596724-6596964)
chr6 (2-241)||(19632503-19632739)
chr6 (2-196)||(6594447-6594641)
chr6 (141-241)||(14820893-14820993)
chr6 (17-124)||(6402939-6403046)
chr6 (171-241)||(6603001-6603071)
chr6 (66-124)||(6585150-6585208)
chr6 (213-241)||(6585078-6585106)
chr6 (141-205)||(9411558-9411622)
[»] chr3 (4 HSPs)
chr3 (1-258)||(13470511-13470768)
chr3 (3-241)||(51764236-51764474)
chr3 (3-238)||(51113580-51113815)
chr3 (62-241)||(514521-514703)
[»] chr7 (4 HSPs)
chr7 (1-256)||(10614656-10614911)
chr7 (1-256)||(15091932-15092187)
chr7 (62-241)||(10169926-10170105)
chr7 (62-241)||(10177451-10177630)
[»] chr1 (6 HSPs)
chr1 (1-241)||(19468295-19468535)
chr1 (68-241)||(9581198-9581374)
chr1 (143-241)||(9586844-9586942)
chr1 (141-180)||(29691334-29691373)
chr1 (141-180)||(29718846-29718885)
chr1 (141-187)||(29658812-29658858)
[»] chr5 (2 HSPs)
chr5 (69-255)||(28525142-28525328)
chr5 (1-255)||(20477864-20478118)
[»] chr4 (13 HSPs)
chr4 (2-241)||(21834174-21834413)
chr4 (1-124)||(53761685-53761808)
chr4 (65-241)||(547040-547219)
chr4 (63-207)||(570476-570617)
chr4 (62-235)||(641039-641212)
chr4 (56-117)||(8187011-8187072)
chr4 (163-243)||(371148-371228)
chr4 (1-241)||(532252-532489)
chr4 (156-241)||(570752-570840)
chr4 (67-117)||(1519063-1519113)
chr4 (156-211)||(53761591-53761646)
chr4 (62-95)||(1552706-1552739)
chr4 (63-107)||(3438496-3438540)
[»] chr8 (2 HSPs)
chr8 (156-241)||(17627852-17627937)
chr8 (64-118)||(17636316-17636370)
[»] chr2 (1 HSPs)
chr2 (61-187)||(1037511-1037640)
[»] scaffold0807 (1 HSPs)
scaffold0807 (61-113)||(1388-1440)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 6589359 - 6589108
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6589359 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 6589260  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6589259 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 6589160  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaa 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6589159 aaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaa 6589108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 6416029 - 6416286
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    |||||||||||||  ||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |  | ||    
T  6416029 tcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacatatctttaa 6416128  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||||||||||||||| ||||| |  |||||||  ||| |||||||||| ||  |||||||||||  |||||| |||||||||||||  | |||| |||    
T  6416129 aacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatgataccttcatcgctt 6416228  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaaactcga 258  Q
    ||||||  |||||| |||||||||||||||||||||||||| |  |||||||||||||    
T  6416229 aaccatttattttttcccaaatagagagactttaattgagggtatacaccaaactcga 6416286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7119220 - 7119462
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||  | |||| ||||||||||||||||||||||||||| |   ||||  |||||||||||||||  |||||||| ||||||| || ||    
T  7119220 tcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaa 7119319  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||||||||||||||| |||||||||||| |||| ||| |||||||| |  | |||||||||||||| |||||| || ||||  || ||| ||||| ||    
T  7119320 aacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagtt 7119419  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgaggat 243  Q
    |||| | ||||| |||| ||||||||||||||||| |||||||    
T  7119420 aaccgtaaatttctacctaaatagagagactttaactgaggat 7119462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7131698 - 7131940
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||  | |||| ||||||||||||||||||||||||||| |   ||||  |||||||||||||||  |||||||| ||||||| || ||    
T  7131698 tcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaa 7131797  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||||||||||||||| |||||||||||| |||| ||| |||||||| |  | |||||||||||||| |||||| || ||||  || ||| ||||| ||    
T  7131798 aacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagtt 7131897  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgaggat 243  Q
    |||| | ||||| |||| ||||||||||||||||| |||||||    
T  7131898 aaccgtaaatttctacctaaatagagagactttaactgaggat 7131940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6426574 - 6426814
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||  ||||||| |||||||||||||| |||| ||||| ||   |||||| ||||||||||||||  ||| |||||||||| | || ||    
T  6426574 tcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacatttccttaa 6426673  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||| ||||||||||| |||||| | |   |||   || |||||||| | || |||||||||||||||||||||| ||||||||||  || ||||||||    
T  6426674 aacttcacaaataccttcagatatttcacggcaaaccttcaaatcaagtagctgtaaattggggaaaatggaagcatacattatgatgatttcatcactt 6426773  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  6426774 aaccatgaatttctacccagatagagagacttcaattgagg 6426814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6432224 - 6432464
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||| |||| |||||||| |||||||||||||| |||||||||||||  ||||  ||||||||||||||||  |||  ||||||||||| || ||    
T  6432224 tcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaa 6432323  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||||||||||||||| |  |||   || |||  ||   ||||||||    |  ||||||||||||||||||||||||||||||||  || |||  |||    
T  6432324 aacttgacaaataccttcatttatacgatgacaccaacgcaaatcaagatgttgcaaattggggaaaatggaagcaaacattatgatcctttcattcctt 6432423  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||||||||| | ||||||||||||||||||||| |||||    
T  6432424 aaccatgaattgtgacccaaatagagagactttaactgagg 6432464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 6410069 - 6410324
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttct-ca 99  Q
    ||||||||| |||| |||||||| |||||||||||||| ||||||||||||| || ||  ||||||||| ||||||| ||| |||||||||| ||||  |    
T  6410069 tcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttttgcaataggctaagtccaaatgcttaagcttacaacat-ttctgta 6410167  T
Q  100 atacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcact 199  Q
    | |||||||||||||||| |||||| |  |  |||    | |||||||| |  | ||||||||| ||||||||||||||||  |||||  || |||||||    
T  6410168 aaacttgacaaataccttcagatatttgctggcaacccgtcaaatcaagtagttgtaaattgggaaaaatggaagcaaacaaaatgattatttcatcact 6410267  T
Q  200 taaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaaactc 256  Q
    |||| ||| ||| | | ||||||||||||||||||||||||| |  |||||||||||    
T  6410268 taacgatgtattgtaatccaaatagagagactttaattgagggtatacaccaaactc 6410324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10579772 - 10579532
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||  ||||| |||||  || |||| |||| |||||||| |   |||   |||||||||||||||| ||||||||| ||||||||   |    
T  10579772 tcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctaagttcaaatgcttaatcttaccacatcttcctga 10579673  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||||| ||||||||| ||||||||  |  |||| ||| |||||||||| ||  ||||||||||||| |||||| |||||||| ||  || |||||| |    
T  10579672 aacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgt 10579573  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||| |||||||| |||||||||||||||| |||||||||||    
T  10579572 aacaatgaatttctacccaaatagagagattttaattgagg 10579532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6394927 - 6395167
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||  ||||||| |||||||||||||| |||| ||||||||   |||||| ||||||||||||||  ||| |||||||||| |  | ||    
T  6394927 tcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaa 6395026  T
Q  101 tacttgacaaatacctttagatatgttatta-caagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcact 199  Q
     |||||||||||||||| |||||| || | | |||    | |||||||| | || |||||||||||||||||||| ||||||||||||  || ||||  |    
T  6395027 aacttgacaaataccttcagatat-ttgtgagcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatgattatttcatctat 6395125  T
Q  200 taaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||||  ||||| |||||||||||||||| ||||| |||||    
T  6395126 taaccagtaatttgtacccaaatagagagagtttaactgagg 6395167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 7994218 - 7994023
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    |||||||||| ||| | |||||||||||||||||||| |||||||||||| |  ||||   ||||| |||||||||||| |||||||||||| | || ||    
T  7994218 tcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaa 7994119  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatc 196  Q
     || | ||||||||||| ||||||   ||| |||||||| ||||| |||| ||  ||||| |||||||||| |||||||| |||||| ||||||||    
T  7994118 aacgtaacaaataccttcagatataccattgcaagaattcaaatcgagcatctgcaaatttgggaaaatggtagcaaacaatatgatgtttgcatc 7994023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 8913955 - 8913783
Alignment:
Q  66 aagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattgggga 165  Q
    |||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||| | ||  ||| |||| ||||||||||  |  |||||||  |    
T  8913955 aagttcaaatgtttaatcttacaacatcttcttaaaacttgacaaatacctttagatatataatctcaataatt-aaatcaagcatatgcaaattggaaa 8913857  T
Q  166 aaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattga 239  Q
    ||||||||||||||||||||||  || ||||  |||||||  |||| | ||||||||| |||||||||||||||    
T  8913856 aaatggaagcaaacattatgatgatttcatccgttaaccacaaattgtcacccaaataaagagactttaattga 8913783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6423280 - 6423520
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    |||||||||||||| ||||||||  |||||||||| || ||||||||||||  | |||  ||||||||||||||||  ||| || || |||| | |  ||    
T  6423280 tcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcacttgttcacaataggctaagttcaaatgtttaagctcacgacatttccgtaa 6423379  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     || ||||||||||| | | |||| | ||  |||   || |||||||| |  | |||||| ||||||||||||||||||||||||||  || ||||||||    
T  6423380 aacatgacaaataccatcaaatatttgatggcaacccttcaaatcaagtagttttaaattagggaaaatggaagcaaacattatgatgatttcatcactt 6423479  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||| ||| | | |||||||||||||||||||||||||||    
T  6423480 aaccacgaagtgtaacccaaatagagagactttaattgagg 6423520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6596964 - 6596724
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||  ||||| | ||||||| ||| ||||| |||||||  |   |||   |||| ||||||||||| ||||||||  |||||| || ||    
T  6596964 tcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcacacttgaacattcggctcagttcaaatgcttaatcttatcacatctcctgaa 6596865  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||||||||||||||| ||| |||||||||  |||||  || ||||||| ||  ||||| || |||| |||||| ||  |||| |||||| ||| ||||    
T  6596864 aacttgacaaataccttcagaaatgttattattagaatataagtcaagcagctgcaaattaggaaaaaaggaagctaatcttataatattttcattactt 6596765  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    |||||  ||||| ||||||||||||||||||||||||||||    
T  6596764 aaccaaaaatttctacccaaatagagagactttaattgagg 6596724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 19632503 - 19632739
Alignment:
Q  2 caacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaat 101  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||| || ||| |   |||    | ||||||||||||| | |||||||||||||||   ||     
T  19632503 caacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttcaaatgcgttatcttacaacatctt---aaa 19632599  T
Q  102 acttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactta 201  Q
    |||||||||||| | |||||||||| ||  |||  ||| |||||||||  ||  |||||||| ||||  ||||| |||||| | || ||| |||||||||    
T  19632600 acttgacaaatagcattagatatgtaatagcaacgattcaaatcaagccgctacaaattgggaaaaaacgaagcgaacattgtaatcttttcatcactta 19632699  T
Q  202 accatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||| | |||||  |||||||||||||||||||||||||||    
T  19632700 accgtaaatttcgacccaaatagagagactttaattgagg 19632739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 6594641 - 6594447
Alignment:
Q  2 caacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaat 101  Q
    ||||||||||||  ||||||||| |||||| |||||| ||||||||||| |   |||   || ||||| ||||||  |||||||| ||||||| || ||     
T  6594641 caacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaa 6594542  T
Q  102 acttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatc 196  Q
    |||||||||||||||| |||||| | ||   || |  | |||||||||| ||| ||| |||||||||| |||||||||| |||||| ||| ||||    
T  6594541 acttgacaaataccttcagatatttgatcggaaaacctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatc 6594447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 14820893 - 14820993
Alignment:
Q  141 aaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgag 240  Q
    |||||||| | || |||||| ||||||||||||||| |||  |||||  || ||||| ||||||||||||| | |||||||||||||||||| |||||||    
T  14820893 aaatcaagtagctttaaatttgggaaaatggaagcatacaaaatgattatttcatcatttaaccatgaattgtgacccaaatagagagacttcaattgag 14820992  T
Q  241 g 241  Q
    |    
T  14820993 g 14820993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 6402939 - 6403046
Alignment:
Q  17 gggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacct 116  Q
    ||||||| ||||||| |||||||||||||||||| |   |||    | |||||||||||||||||| ||||||||||| || || |||||||||||||||    
T  6402939 gggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacct 6403038  T
Q  117 ttagatat 124  Q
    | ||||||    
T  6403039 tcagatat 6403046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 6603071 - 6603001
Alignment:
Q  171 gaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||||||||||||||| |||  | ||||||||||| |||| | ||| |||||||||||||||||||||||    
T  6603071 gaagcaaacattatgattttttgaacacttaaccataaattgtcacctaaatagagagactttaattgagg 6603001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 6585208 - 6585150
Alignment:
Q  66 aagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatat 124  Q
    ||||||||||||||||| ||| ||||||| || || || ||||||||||||| ||||||    
T  6585208 aagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttcagatat 6585150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 6585106 - 6585078
Alignment:
Q  213 ttacccaaatagagagactttaattgagg 241  Q
    |||||||||||||||||||||||||||||    
T  6585106 ttacccaaatagagagactttaattgagg 6585078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 9411558 - 9411622
Alignment:
Q  141 aaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaacca 205  Q
    |||||||||| ||  |||||||||||||||||||||||| || |||| |||  ||| ||||||||    
T  9411558 aaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctcttaacca 9411622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 13470768 - 13470511
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| | || ||    
T  13470768 tcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaa 13470669  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     ||||||||||||||||| |||| |  ||| ||| |||| |||||||||| ||  |||||||||||| |||||||||||||||||||   | ||||||||    
T  13470668 aacttgacaaataccttttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatgatgccttcatcactt 13470569  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaaactcga 258  Q
    ||||||  |||||| |||||||||||||||||||||||||| |  ||||||| |||||    
T  13470568 aaccattgattttttcccaaatagagagactttaattgagggtatacaccaacctcga 13470511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 51764474 - 51764236
Alignment:
Q  3 aacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaata 102  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||| |   |||   || || ||||||||||||||||||| ||||||| || || |    
T  51764474 aacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaa 51764375  T
Q  103 cttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaa 202  Q
    ||| ||| | |||||||||||||  ||| |||||||| |||||||||| ||  ||||||||||||||||||||||||||||||||  || ||||||||||    
T  51764374 cttcacagacacctttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaa 51764275  T
Q  203 ccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||| ||||| ||||| |||||||||||||||||||||    
T  51764274 ccatgtattttcacccagatagagagactttaattgagg 51764236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 51113815 - 51113580
Alignment:
Q  3 aacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaata 102  Q
    |||||||||||  ||||| || |||||||||||||||||||||||| |||   |||| | ||||| |||||||||||||| |||||||||||  | || |    
T  51113815 aacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaa 51113716  T
Q  103 cttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaa 202  Q
    |||||||||||||||  ||||| | ||  |||  | | |||||||| | ||  | |||||||||||||||||||| |||||||||  |  |||| |||||    
T  51113715 cttgacaaataccttcggatatctcatagcaatgagttaaatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcatctcttaa 51113616  T
Q  203 ccatgaatttttacccaaatagagagactttaattg 238  Q
    ||||| ||| | | |||| | |||||||||||||||    
T  51113615 ccatggattgtgatccaactggagagactttaattg 51113580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 514703 - 514521
Alignment:
Q  62 ggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaataccttt---agatatgttattacaagaattgaaatcaagcacctctaaa 158  Q
    ||||||||||||||||||||||||| | |||||  | || |||||||| |||| |||   ||||||||||| |||| |  | |||||||  | ||  |||    
T  514703 ggctaagttcaaatgcctaatcttagaccatctctttaaaacttgacagatacttttgtcagatatgttatcacaatagctcaaatcaattagctgcaaa 514604  T
Q  159 ttggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    || |||||||| |||||||||||||| |  ||| |||| ||||| |||||||| | | ||||||||||||| |||||||||||    
T  514603 ttcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattgagg 514521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 10614656 - 10614911
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    |||||||||||||  ||||||| |||| |||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| | || ||    
T  10614656 tcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaa 10614755  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||||||||||||||| | ||| |  ||| |||  ||| ||||||||||  |  |||||||||||| ||||||||||| |||| ||   | |||| |||    
T  10614756 aacttgacaaataccttcatataagagattgcaacgattcaaatcaagcagttgcaaattggggaaattggaagcaaactttataatgccttcatcgctt 10614855  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaaactc 256  Q
    |||||   |||||| |||||||||||||||||||||||||| |  |||||||||||    
T  10614856 aaccactgattttttcccaaatagagagactttaattgagggtatacaccaaactc 10614911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 15092187 - 15091932
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||  ||||||| |||||||||||||| |||| |||||  |   |||    | ||||||||||||  ||| |||| ||||| | || ||    
T  15092187 tcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaa 15092088  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     |||||| ||||||||| |||||||||||  |||  |   |||||||| | |||||| |||||||||||||||||||  ||| ||||  || ||||||||    
T  15092087 aacttgagaaataccttgagatatgttatagcaatgacccaaatcaagtagctctaagttggggaaaatggaagcaagtattctgatgatttcatcactt 15091988  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaaactc 256  Q
    ||||   |||| | | ||||||||||||||||||||||||| |  |||||||||||    
T  15091987 aaccggtaattgtgagccaaatagagagactttaattgagggtatacaccaaactc 15091932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 10170105 - 10169926
Alignment:
Q  62 ggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattg 161  Q
    |||||| || ||||||||||| ||| |||| || || || ||||||||||| ||||  ||||||| ||| ||||| || ||||||| || ||  |||||     
T  10170105 ggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtgattgcaagagttcaaatcaaacagcttcaaatta 10170006  T
Q  162 gggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    || |||||||||| |||||||||||| | | |||| |||| ||||| ||| | | |||||||||||||||| ||||||||    
T  10170005 ggaaaaatggaagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaatagagagacttcaattgagg 10169926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 10177630 - 10177451
Alignment:
Q  62 ggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattg 161  Q
    |||||| || ||||||||||| ||| |||| || || || ||||||||||| ||||  ||||||| ||| ||||| || ||||||| || ||  |||||     
T  10177630 ggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtgattgcaagagttcaaatcaaacagcttcaaatta 10177531  T
Q  162 gggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    || |||||||||| |||||||||||| | | |||| |||| ||||| ||| | | |||||||||||||||| ||||||||    
T  10177530 ggaaaaatggaagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaatagagagacttcaattgagg 10177451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 19468535 - 19468295
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||||| |   ||||  ||||||||| ||||||||||| ||| |||| || || ||    
T  19468535 tcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaa 19468436  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     ||||||||||| ||||  |||||||  || || || || |||||||||| ||  |||||||| ||||||||||||||||||||||| ||| |||| |||    
T  19468435 aacttgacaaatgccttccgatatgtggttgcatgagttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgctt 19468336  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||||||||| | | |||| |||||| |||||||||||||    
T  19468335 aaccatgaattctcagccaagtagagatactttaattgagg 19468295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 241
Target Start/End: Original strand, 9581198 - 9581374
Alignment:
Q  68 gttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacct---ttagatatgttattacaagaattgaaatcaagcacctctaaattgggg 164  Q
    ||||||||| ||||||| |||||||||| | || |||||||||||||||   ||||||||||||   |||      | |||||||| ||  |||||||||    
T  9581198 gttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgggg 9581297  T
Q  165 aaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||| ||||||||||||||||| |||  ||| ||||| |||  ||| | ||||||||  |||||||||||||||||    
T  9581298 aaaattgaagcaaacattatgatgtttttatctcttaaacattgattgtgacccaaatcaagagactttaattgagg 9581374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 9586844 - 9586942
Alignment:
Q  143 atcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    |||||||| ||  |||||||||||||| ||||||||||||||||| |||  ||| |||||||||  |||   ||||||||  |||||||| ||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaagagacttcaattgagg 9586942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 29691373 - 29691334
Alignment:
Q  141 aaatcaagcacctctaaattggggaaaatggaagcaaaca 180  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  29691373 aaatcaagcacctccaagttggggaaaatggaagcaaaca 29691334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 29718885 - 29718846
Alignment:
Q  141 aaatcaagcacctctaaattggggaaaatggaagcaaaca 180  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  29718885 aaatcaagcacctccaagttggggaaaatggaagcaaaca 29718846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 29658858 - 29658812
Alignment:
Q  141 aaatcaagcacctctaaattggggaaaatggaagcaaacattatgat 187  Q
    ||||||||||| || || |||||||||||||||||||||| ||||||    
T  29658858 aaatcaagcacttccaagttggggaaaatggaagcaaacaatatgat 29658812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 28525142 - 28525328
Alignment:
Q  69 ttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaa 168  Q
    ||||||| ||| |||||||||||||| || || ||||||||||||| |||||||||||  ||||||   |  |||| ||||||||| |||||| ||||||    
T  28525142 ttcaaatccctcatcttacaacatctccttaaaacttgacaaatacatttagatatgtgcttacaatggtccaaattaagcacctccaaattgtggaaaa 28525241  T
Q  169 tggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaaact 255  Q
    ||||||||||| ||||||||||| | || |||||||||||||| | || ||||| ||||||||||||||||||||| | ||||||||    
T  28525242 tggaagcaaaccttatgatattttcgtcccttaaccatgaattgtcacacaaattgagagactttaattgaggatgtagaccaaact 28525328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 20478118 - 20477864
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||||||||||||  ||||| ||||| ||| ||||||||||||||| || |   |||    ||||||||||||||||| | ||||||||||||  | ||    
T  20478118 tcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaagttcaaatgccttaacttacaacatctcgttaa 20478019  T
Q  101 tacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactt 200  Q
     | |||||||||| ||| ||||||   ||| ||  ||   ||||||||    |  ||||||||||| || |||||||| ||||| ||  || ||||||||    
T  20478018 gaattgacaaatatcttcagatatacgattgcaccaaggaaaatcaagatgttgcaaattggggaacatagaagcaaatattattattatttcatcactt 20477919  T
Q  201 aaccatgaatttttacccaaatagagagactttaattgaggatgaacaccaaact 255  Q
    ||||||| ||| | |||||| ||||||||||| ||| ||||||  ||||||||||    
T  20477918 aaccatggattatgacccaagtagagagacttcaatcgaggatatacaccaaact 20477864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 21834413 - 21834174
Alignment:
Q  2 caacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaat 101  Q
    ||||||||||||| |||||||||||||||| || | | ||||||||||||| | |||    | ||||||||||||| |||||||||||||| | || ||     
T  21834413 caacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacatttccttaaa 21834314  T
Q  102 acttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcactta 201  Q
    ||||  ||||||||||  ||||| |   |  ||||| | |||||||||| || ||||||||||||||| |||||||||||||||||  || ||||| |||    
T  21834313 acttcgcaaataccttctgatatctgtgtggaagaagtcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattctttcatcattta 21834214  T
Q  202 accatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||||||||    |||||| |||||||||||||||||||    
T  21834213 accatgaattgcggcccaaaaagagagactttaattgagg 21834174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 53761808 - 53761685
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    ||||| |||| ||| |||||||||||||||||||||||| |||||||||| |   |||   ||||||||||||||||||||| ||||||||||| || ||    
T  53761808 tcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaa 53761709  T
Q  101 tacttgacaaatacctttagatat 124  Q
     |||||||||||||||||||||||    
T  53761708 aacttgacaaatacctttagatat 53761685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 547040 - 547219
Alignment:
Q  65 taagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatac---ctttagatatgttattacaagaattgaaatcaagcacctctaaattg 161  Q
    ||||||||||||||| |||||||||||||| || || || | ||||||||   ||| ||||||||||  |||| || | ||||||||||  |  ||||||    
T  547040 taagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataacttaaatcaagcagttgcaaattg 547139  T
Q  162 gggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||| ||||||| ||||||| ||||  || |||| ||||  |||||||||||| |||||| ||||||||| ||||||||    
T  547140 gggaacatggaaggaaacattttgatgctttcatctcttatgcatgaatttttagccaaatggagagacttcaattgagg 547219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 570476 - 570617
Alignment:
Q  63 gctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattgg 162  Q
    |||||||||||||||||||  ||||||||||||   || |||||||||||||  |  ||||| | ||| ||| || | |||||||| | ||  |||||||    
T  570476 gctaagttcaaatgcctaagtttacaacatctt---aaaacttgacaaatactatcggatatctgattgcaataacttaaatcaagtatctgcaaattgg 570572  T
Q  163 ggaaaatggaagcaaacattatgatatttgcatcacttaaccatg 207  Q
    ||||||| |||||||||||||  || ||| |||||||||||||||    
T  570573 ggaaaatagaagcaaacattaaaatgttttcatcacttaaccatg 570617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 641039 - 641212
Alignment:
Q  62 ggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattg 161  Q
    ||||||||||||||| ||||  ||||||||| | || || |||||| |||| |||| ||||| || || ||||  | | |||||||||| |  ||||||     
T  641039 ggctaagttcaaatgtctaacattacaacatatccttaaaacttgaaaaattccttcagatacgtgatcacaatcactcaaatcaagcaaccgtaaattt 641138  T
Q  162 gggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaa 235  Q
    ||||| ||||||||||||||||| || ||| |||| |||| |||  |||| | | |||||| |||| |||||||    
T  641139 gggaacatggaagcaaacattattatgttttcatctcttagccaaaaattatgagccaaatggagacactttaa 641212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 8187072 - 8187011
Alignment:
Q  56 acagaaggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctt 117  Q
    |||| ||||||||||||||| |||||||| |||||||||  |||| ||||||||||||||||    
T  8187072 acagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaatacctt 8187011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 371148 - 371228
Alignment:
Q  163 ggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgaggat 243  Q
    ||||||| |||||||||||||| |  | | |||| |||||||||||||| | | ||||||||||||| |||||||||||||    
T  371148 ggaaaattgaagcaaacattataaggtattcatctcttaaccatgaattgtgagccaaatagagagattttaattgaggat 371228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 532252 - 532489
Alignment:
Q  1 tcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacatcttctcaa 100  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||| |||||  ||||  || ||| |||||||||||  || |||||   ||||||  ||||    
T  532252 tcaacacctctagcttggggacttcaaagttcattccaagtagattcac--tcttgaag-aggttaagttcaaatctctgatctt---acatctcttcaa 532345  T
Q  101 tacttgacaaatac---ctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatca 197  Q
     |||||| ||||||   ||||||||||||||| |||| |  | || || ||||  | |||||||||||||||||| ||||||||||| ||  || ||||     
T  532346 aacttgataaataccttctttagatatgttataacaatagctcaagtccagcatatgtaaattggggaaaatggatgcaaacattataatgctttcatct 532445  T
Q  198 cttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    || ||||||  | |  |||||||||  ||||||||||| |||||    
T  532446 ctcaaccattgactcatacccaaatttagagactttaactgagg 532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 570752 - 570840
Alignment:
Q  156 aaattggggaaaatggaagcaaacattatgata---tttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||||||||||||||||||||||||||| |||   ||| ||||||||||||||| ||| | | ||||  | |||||||| ||||||||    
T  570752 aaattggggaaaatggaagcaaacattataataatgttttcatcacttaaccatgtattgtgagccaaggatagagacttcaattgagg 570840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 1519113 - 1519063
Alignment:
Q  67 agttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctt 117  Q
    ||||||||||||||||| | ||||||||||| || ||||||||||||||||    
T  1519113 agttcaaatgcctaatccttcaacatcttcttaaaacttgacaaatacctt 1519063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 53761646 - 53761591
Alignment:
Q  156 aaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatt 211  Q
    |||||||||||||| || |||||| ||||||| ||| ||||||||||||| |||||    
T  53761646 aaattggggaaaattgatgcaaacgttatgatgttttcatcacttaaccaagaatt 53761591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 1552739 - 1552706
Alignment:
Q  62 ggctaagttcaaatgcctaatcttacaacatctt 95  Q
    ||||||||||||||| ||||||||||||||||||    
T  1552739 ggctaagttcaaatgtctaatcttacaacatctt 1552706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 3438540 - 3438496
Alignment:
Q  63 gctaagttcaaatgcctaatcttacaacatcttctcaatacttga 107  Q
    |||||||||||||| ||||||||||||||||| || || ||||||    
T  3438540 gctaagttcaaatgtctaatcttacaacatctccttaaaacttga 3438496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 17627937 - 17627852
Alignment:
Q  156 aaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 241  Q
    ||||||||||||||||||||||||||| |||| ||| |||| | || | |||||||   | ||||||||||||| |||||||||||    
T  17627937 aaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgagg 17627852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 17636370 - 17636316
Alignment:
Q  64 ctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaataccttt 118  Q
    ||||||||||||||||||| ||| ||||||  || || |||||||||||||||||    
T  17636370 ctaagttcaaatgcctaatattagaacatccccttaaaacttgacaaataccttt 17636316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 1037640 - 1037511
Alignment:
Q  61 aggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatac---ctttagatatgttattacaagaattgaaatcaagcacctctaa 157  Q
    ||||||| |||||||| |||| |||||||||||| || || |||| ||||||||   ||| |||||||||||  || ||  | |||||||| |  |  ||    
T  1037640 aggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaa 1037541  T
Q  158 attggggaaaatggaagcaaacattatgat 187  Q
    ||||||||||||||||||||||| ||||||    
T  1037540 attggggaaaatggaagcaaacaatatgat 1037511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 1440 - 1388
Alignment:
Q  61 aggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaata 113  Q
    |||||||||||||||| ||||||||| ||||||| || || ||||||||||||    
T  1440 aggctaagttcaaatgtctaatcttataacatctccttaaaacttgacaaata 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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