View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_74 (Length: 256)
Name: NF6869A_low_74
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 33810959 - 33810741
Alignment:
| Q |
19 |
aggtatagagtaaagggatggctcgagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaagctggattgc |
118 |
Q |
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| T |
33810959 |
aggtatagggtaaagggatggctcgagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaagctggattgc |
33810860 |
T |
|
| Q |
119 |
ttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810859 |
ttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatccc |
33810760 |
T |
|
| Q |
219 |
ttgctctcttacccctcta |
237 |
Q |
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||||||||||||||||||| |
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| T |
33810759 |
ttgctctcttacccctcta |
33810741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 33870428 - 33870210
Alignment:
| Q |
19 |
aggtatagagtaaagggatggctcgagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaagctggattgc |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33870428 |
aggtatagggtaaagggatggctcgagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaagctggattgc |
33870329 |
T |
|
| Q |
119 |
ttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatccc |
218 |
Q |
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| T |
33870328 |
ttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatccc |
33870229 |
T |
|
| Q |
219 |
ttgctctcttacccctcta |
237 |
Q |
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||||||||||||||||||| |
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| T |
33870228 |
ttgctctcttacccctcta |
33870210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 33831068 - 33830917
Alignment:
| Q |
85 |
agaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttca |
184 |
Q |
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||||||||||||||||||||| ||| |||||| ||||||| ||| |||||||||| | | ||||||||||||||||| ||||||| |||||||||| |
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| T |
33831068 |
agaagaagacacagtcttctacaagttggattcagtttgatgctacaggccaagggtggattcatgatgtggacaagtatgttatcatgaatagggttca |
33830969 |
T |
|
| Q |
185 |
gattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
236 |
Q |
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||| |||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
33830968 |
tattgatgcacgtgatcttagaatccttgatcctttgccctcttacccctct |
33830917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 33893231 - 33893080
Alignment:
| Q |
85 |
agaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttca |
184 |
Q |
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||||||||||||||||||||| ||| |||||| ||||||| ||| |||||||||| | | ||||||||||||||||| ||||||| |||||||||| |
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| T |
33893231 |
agaagaagacacagtcttctacaagttggattcagtttgatgctacaggccaagggtggattcatgatgtggacaagtatgttatcatgaatagggttca |
33893132 |
T |
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| Q |
185 |
gattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
236 |
Q |
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||| |||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
33893131 |
tattgatgcacgtgatcttagaatccttgatcctttgccctcttacccctct |
33893080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 24408805 - 24408960
Alignment:
| Q |
79 |
ttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatag |
178 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||| ||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
24408805 |
ttgtgaagaagaagacacagtcttttggaagctggattgctttggatagtaatggccactggtctcaaattgatgtggacaagtatgctatcatgcatag |
24408904 |
T |
|
| Q |
179 |
ggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccct |
234 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24408905 |
ggttcagattaatgcacatgatcttagaatccttgatcccttgctctcttacccct |
24408960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 24410211 - 24410123
Alignment:
| Q |
148 |
ttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24410211 |
ttgatgtggacaagtatgctatcatgcatagggttcagattaatgcatgtgatcttagaatccttgatcccttgctctcttacccctct |
24410123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 24410676 - 24410634
Alignment:
| Q |
79 |
ttgtgaagaagaagacacagtcttctagaagctggattgcttt |
121 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||| |
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| T |
24410676 |
ttgtgaagaagaagacacagtcttttggaagctggattgcttt |
24410634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 58
Target Start/End: Original strand, 24408777 - 24408808
Alignment:
| Q |
27 |
agtaaagggatggctcgagatggtagcgttgt |
58 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24408777 |
agtaaagggatggctcgagatggtagcgttgt |
24408808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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