View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6869A_low_77 (Length: 255)
Name: NF6869A_low_77
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_77 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 377182 - 376976
Alignment:
| Q |
3 |
aataatgggtgctctcgtaaatttaaatttaaattagtatagtcgacgtgccaaatgttaaaaatgtgccataaactgttgaatcaggtttaagcaagtt |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
377182 |
aataatgggtgttctcgtaaatttaaattttaattagtatagtcgacgtgccaaatgttaaaaatgtgccacaaactgttgaatcaggtttaaacaagtt |
377083 |
T |
|
| Q |
103 |
ataggtaaagcatcttgaccatcaaatattttaatcttatatcatgcggttataaactcatttacacaatgagagacccatattggccgctcacgctaga |
202 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
377082 |
atagataaagcatcttgaccatcaaatattttaatcttatatcatgcggttataaactcatttgcacaatgaaagacccatattggccgctcacgctaga |
376983 |
T |
|
| Q |
203 |
cggagcc |
209 |
Q |
| |
|
||||||| |
|
|
| T |
376982 |
cggagcc |
376976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University