View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6869A_low_83 (Length: 250)

Name: NF6869A_low_83
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6869A_low_83
NF6869A_low_83
[»] chr2 (11 HSPs)
chr2 (12-249)||(27192468-27192705)
chr2 (12-249)||(27842282-27842519)
chr2 (12-250)||(24269072-24269310)
chr2 (12-241)||(17683840-17684069)
chr2 (12-250)||(21395349-21395587)
chr2 (24-249)||(24245816-24246041)
chr2 (24-249)||(27509365-27509590)
chr2 (12-250)||(28666174-28666412)
chr2 (12-250)||(37825008-37825246)
chr2 (12-250)||(41920175-41920413)
chr2 (12-213)||(35609664-35609865)
[»] chr6 (8 HSPs)
chr6 (12-250)||(18344104-18344342)
chr6 (12-250)||(2202181-2202419)
chr6 (12-246)||(10187523-10187757)
chr6 (24-250)||(30881318-30881544)
chr6 (14-250)||(29640030-29640266)
chr6 (12-227)||(15333622-15333837)
chr6 (14-249)||(31510202-31510437)
chr6 (12-160)||(12517367-12517515)
[»] chr5 (14 HSPs)
chr5 (12-250)||(25542795-25543033)
chr5 (12-250)||(14192814-14193052)
chr5 (24-250)||(17871639-17871865)
chr5 (12-250)||(27881063-27881301)
chr5 (12-249)||(39883162-39883399)
chr5 (12-250)||(8428576-8428814)
chr5 (12-250)||(37372915-37373153)
chr5 (24-249)||(3689968-3690193)
chr5 (24-249)||(3876594-3876819)
chr5 (12-200)||(37261294-37261482)
chr5 (12-159)||(24629954-24630101)
chr5 (12-159)||(10025042-10025189)
chr5 (12-159)||(30346637-30346784)
chr5 (24-53)||(6089201-6089230)
[»] chr1 (11 HSPs)
chr1 (12-210)||(48238519-48238717)
chr1 (12-250)||(2453119-2453357)
chr1 (12-250)||(2329148-2329383)
chr1 (12-247)||(36207194-36207429)
chr1 (15-250)||(37390154-37390389)
chr1 (24-250)||(18148679-18148905)
chr1 (12-250)||(16042004-16042242)
chr1 (12-231)||(6311015-6311235)
chr1 (12-250)||(48775337-48775575)
chr1 (12-159)||(52500648-52500795)
chr1 (153-250)||(48233498-48233595)
[»] scaffold0017 (1 HSPs)
scaffold0017 (25-250)||(186546-186771)
[»] chr8 (7 HSPs)
chr8 (12-250)||(25218567-25218805)
chr8 (12-250)||(21113746-21113984)
chr8 (12-250)||(7821817-7822055)
chr8 (12-250)||(30307156-30307394)
chr8 (24-230)||(31978549-31978755)
chr8 (12-181)||(25209103-25209272)
chr8 (197-231)||(25209068-25209102)
[»] chr4 (8 HSPs)
chr4 (12-249)||(1860656-1860893)
chr4 (12-250)||(49710152-49710389)
chr4 (12-250)||(35855886-35856124)
chr4 (12-250)||(38518075-38518313)
chr4 (12-250)||(49786830-49787068)
chr4 (12-159)||(55559131-55559278)
chr4 (118-250)||(13337320-13337452)
chr4 (206-250)||(618226-618270)
[»] scaffold0134 (1 HSPs)
scaffold0134 (12-250)||(5262-5499)
[»] chr7 (9 HSPs)
chr7 (12-250)||(5828557-5828795)
chr7 (12-250)||(21070064-21070302)
chr7 (12-231)||(7036699-7036918)
chr7 (12-231)||(12781169-12781389)
chr7 (12-238)||(9001159-9001385)
chr7 (24-250)||(22843795-22844021)
chr7 (12-250)||(12785980-12786218)
chr7 (12-159)||(42232063-42232210)
chr7 (162-207)||(18939139-18939184)
[»] chr3 (13 HSPs)
chr3 (12-250)||(50410151-50410389)
chr3 (12-250)||(32750-32988)
chr3 (12-250)||(10110579-10110817)
chr3 (12-231)||(52918045-52918264)
chr3 (12-250)||(10000386-10000624)
chr3 (12-250)||(13530018-13530256)
chr3 (12-248)||(10968785-10969021)
chr3 (12-250)||(10237535-10237772)
chr3 (24-250)||(11368638-11368865)
chr3 (14-250)||(11362239-11362476)
chr3 (12-207)||(46913050-46913245)
chr3 (24-200)||(10038631-10038807)
chr3 (12-179)||(47692948-47693115)
[»] scaffold0262 (1 HSPs)
scaffold0262 (15-250)||(18988-19223)
[»] scaffold1139 (1 HSPs)
scaffold1139 (24-250)||(991-1217)
[»] scaffold0073 (2 HSPs)
scaffold0073 (12-250)||(31912-32149)
scaffold0073 (12-238)||(19436-19662)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-250)||(321338-321576)
[»] scaffold0356 (1 HSPs)
scaffold0356 (12-250)||(17878-18109)
[»] scaffold0090 (1 HSPs)
scaffold0090 (12-250)||(48938-49176)
[»] scaffold0550 (1 HSPs)
scaffold0550 (12-250)||(574-812)
[»] scaffold0003 (2 HSPs)
scaffold0003 (24-250)||(182802-183028)
scaffold0003 (14-250)||(165511-165748)
[»] scaffold0025 (1 HSPs)
scaffold0025 (12-238)||(16663-16889)
[»] scaffold0118 (1 HSPs)
scaffold0118 (12-159)||(28727-28874)
[»] scaffold0888 (1 HSPs)
scaffold0888 (24-130)||(24-130)
[»] scaffold1424 (1 HSPs)
scaffold1424 (12-85)||(1627-1700)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 27192468 - 27192705
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    |||||||||||  |||||||||||||||||| |||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  27192468 tggacatcaaaaatttcacccgatcgacaaatagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcatatattcgttaacatgct 27192567  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27192568 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 27192667  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatctt 249  Q
    ||||||| |||||||||||| ||||||||| |||||||    
T  27192668 catcaacagatttgttgtgtccgatatgagcaaatctt 27192705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 27842282 - 27842519
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    |||||||||||  |||||||||||||||||| |||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  27842282 tggacatcaaaaatttcacccgatcgacaaatagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcatatattcgttaacatgct 27842381  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27842382 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 27842481  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatctt 249  Q
    ||||||| |||||||||||| ||||||||| |||||||    
T  27842482 catcaacagatttgttgtgtccgatatgagcaaatctt 27842519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 24269310 - 24269072
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  24269310 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 24269211  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24269210 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtga 24269111  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||| |||||||||||| ||||||||| ||||||||    
T  24269110 catcaacagatttgttgtgtccgatatgagcaaatcttc 24269072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 17684069 - 17683840
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||||| ||||||||||||||||||||| ||||| || |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  17684069 tggacatcaaaattttcacccgatcgacaaacaaaatcatagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 17683970  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17683969 caattgaatcaagcgttggagcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 17683870  T
Q  212 catcaacggatttgttgtgttcgatatgag 241  Q
    |||||||||||||||||||| | |||||||    
T  17683869 catcaacggatttgttgtgtccaatatgag 17683840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 21395349 - 21395587
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  21395349 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 21395448  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||| |||||||||||||| ||    
T  21395449 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatatacaaagtctataagcga 21395548  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||||||| |||||| || ||||||||    
T  21395549 catcaacggatttgttgtgtccgatatcagcaaatcttc 21395587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 24245816 - 24246041
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  24245816 ttttcacccgatcgacaaacagaatcagatcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaa 24245915  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  24245916 gcgttggtgcgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaggtctataagtgacatccacggatt 24246015  T
Q  224 tgttgtgttcgatatgagtaaatctt 249  Q
    |||||||| || |||||| |||||||    
T  24246016 tgttgtgtccgttatgagcaaatctt 24246041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 27509365 - 27509590
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  27509365 ttttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaatcaa 27509464  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    |||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  27509465 gcgttgatgcgagtattcccctttcttggaaaaatagcaggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgatatcaacgaatt 27509564  T
Q  224 tgttgtgttcgatatgagtaaatctt 249  Q
    |||||||| ||| ||||| |||||||    
T  27509565 tgttgtgtccgacatgagcaaatctt 27509590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 28666412 - 28666174
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||| |||| | ||| |||||||||| |||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  28666412 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 28666313  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| ||||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  28666312 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtga 28666213  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||| ||||| || ||||||||    
T  28666212 catcaacggatttgttgtgtttgatatcagcaaatcttc 28666174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 37825246 - 37825008
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||| |||| | ||| |||||||||| |||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  37825246 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 37825147  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| ||||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  37825146 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcatttagatcgggatacacagagtctataagtga 37825047  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||| ||||| || ||||||||    
T  37825046 catcaacggatttgttgtgtttgatatcagcaaatcttc 37825008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 41920413 - 41920175
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| | ||| |||||||||| |||||| |||||| ||||| |||||||||| |||||||||| |||||||||||||||    
T  41920413 tggacatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttatcttcacctggaatcaacgacatcataaattcgttaacatgct 41920314  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
     || |||||| ||||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41920313 taattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 41920214  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||  ||||| || ||||||||    
T  41920213 catcaacggatttgttgtgtctgatatcagcaaatcttc 41920175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 35609664 - 35609865
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||| ||||||||||||| |||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||| ||    
T  35609664 tggacatcagaattttcactcgatcgacaaacataatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatact 35609763  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  35609764 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaatgttatcattcaaatcggaatacacaaagtctataagtga 35609863  T
Q  212 ca 213  Q
    ||    
T  35609864 ca 35609865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 18344104 - 18344342
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||||| ||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18344104 tggacatcaaaattttcacccgatcgacaaatagaatcaaagcttaaatactctttctcttcgcctggaatcagcgacatcatatattcgtcaacatgct 18344203  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344204 caactgaatcaagcgttggtgcaagtattcccctttcttggaaaaatagatggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 18344303  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||| |||||||||||||||| ||||||||| ||||||||    
T  18344304 catgaacggatttgttgtgtccgatatgagcaaatcttc 18344342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 2202419 - 2202181
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  2202419 tggacatcagaattttcacccgatcgacaaatagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 2202320  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    | |||||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2202319 ctactgaattaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 2202220  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  2202219 catcaacggatttattgtgttcgatatgagcaaatcttc 2202181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 10187523 - 10187757
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10187523 tggacatcaaaattttcacccgatcgacaaacagaatcatagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 10187622  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| || ||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10187623 caattgaatcaagtgttggagcgagtattcccttttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 10187722  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaat 246  Q
    ||||||||||||| |||||| | ||||||| ||||    
T  10187723 catcaacggattttttgtgtccaatatgagcaaat 10187757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 30881318 - 30881544
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |    
T  30881318 ttttcacccgatcgacaaacagaaccagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaatcaa 30881417  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  30881418 gcgttggtgcgagtatttccctttcttggaaaaatagcgggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacggatt 30881517  T
Q  224 tgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||| ||||||||| ||||||||    
T  30881518 tgttgtgtccgatatgagcaaatcttc 30881544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 29640266 - 29640030
Alignment:
Q  14 gacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctca 113  Q
    ||||||| | ||||||||||||| | ||| ||||| |||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  29640266 gacatcagaattttcacccgatctaaaaatagaattagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctca 29640167  T
Q  114 actgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgaca 213  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29640166 actgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcaggatacacaaagtctataagtgaca 29640067  T
Q  214 tcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||| ||||||||||| | ||||| || ||||||||    
T  29640066 tcaacagatttgttgtggttgatatcagcaaatcttc 29640030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 15333622 - 15333837
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||| |||| ||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  15333622 tggacatcagaattttcacctgatctacaaacagaatcagagcctaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 15333721  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| || |||||||||||||||||  ||| ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  15333722 caactgaatcaagtgttggtgcgagtattcccatttgttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctattagtga 15333821  T
Q  212 catcaacggatttgtt 227  Q
    ||||||||||||||||    
T  15333822 catcaacggatttgtt 15333837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 31510437 - 31510202
Alignment:
Q  14 gacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctca 113  Q
    ||||||| | ||||||||||||| | ||| ||||| |||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  31510437 gacatcagaattttcacccgatctaaaaatagaattagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctca 31510338  T
Q  114 actgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgaca 213  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||  ||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  31510337 actgaatcaagcgttggtgcgagtattcccctttcttgaaaaaatagttggtcaccaaggttatcattcagattaggatacacaaagtctataagtgaca 31510238  T
Q  214 tcaacggatttgttgtgttcgatatgagtaaatctt 249  Q
    ||||| ||||||||||| | ||||| || |||||||    
T  31510237 tcaacagatttgttgtggttgatatcagcaaatctt 31510202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 12517367 - 12517515
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||| |||  ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  12517367 tggacatcagaattttcaccccatcatcaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 12517466  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatag 160  Q
    |||||||||| ||||||||||| | |||||| |||||||||||||||||    
T  12517467 caactgaatcaagcgttggtgcaaatattcccctttcttggaaaaatag 12517515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 25543033 - 25542795
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  25543033 tggacatcataattttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 25542934  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25542933 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 25542834  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||  ||||||||||| ||||||||| ||||||||    
T  25542833 catcaacatatttgttgtgtccgatatgagaaaatcttc 25542795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 14193052 - 14192814
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  14193052 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 14192953  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  14192952 caactgaattaagcgttggtgcgagtattcccctttcttggaaaaatagcggatcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 14192853  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||| |||||||||||| ||||||||| ||||||||    
T  14192852 catcaacagatttgttgtgtccgatatgagcaaatcttc 14192814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 17871865 - 17871639
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |    
T  17871865 ttttcacccgatcgacaaacagaaccagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaatcaa 17871766  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  17871765 gcgttggtgcgagtatttccctttcttggaaaaatagcgggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacggatt 17871666  T
Q  224 tgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||| ||||||||| ||||||||    
T  17871665 tgttgtgtccgatatgagcaaatcttc 17871639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 27881063 - 27881301
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| ||||| |||||||||| |||||| |||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  27881063 tggacatcataattttcacccgatctacaaatagaatcagagcttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgct 27881162  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    || ||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27881163 cagctgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 27881262  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||| || |||||| || ||||||||    
T  27881263 catcaacggatttgttgggtccgatatcagcaaatcttc 27881301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 39883162 - 39883399
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | || |||||||||| |||||||||||||||| |||||| |||||||||||| | |||||||| |||||||||| |||||||||||||||    
T  39883162 tggacatcataattgtcacccgatctacaaacagaatcagagcttaaatactctttctcttcacttggaatcaacgacatcataaattcgttaacatgct 39883261  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||||||  || |||||||||||||||||| |||||||||||||||||||||||||||    
T  39883262 caactgaatcaagcgttggtgcgagtattcccctttcttggcaaaatagctgggcaccaaggttatcattcagatcgggatacacaaagtctataagtga 39883361  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatctt 249  Q
    |||||||||||||||||||| |||||| || |||||||    
T  39883362 catcaacggatttgttgtgtccgatatcagcaaatctt 39883399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 8428814 - 8428576
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | | ||||||||||| | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  8428814 tggacatcagaatattcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 8428715  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| ||||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8428714 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 8428615  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||  ||||| || ||||||||    
T  8428614 catcaacggatttgttgtgtctgatatcagcaaatcttc 8428576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 37372915 - 37373153
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | || |||||||||| | ||| |||||||||| |||||| |||||||||||| ||||||||||| ||||||||| ||| |||||||||||    
T  37372915 tggacatcagaattatcacccgatctaaaaatagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcataaattggttaacatgct 37373014  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37373015 caactgaatcaagcgttggtgcgagtattcccctttcttcgaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 37373114  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||| |||  ||||| || ||||||||    
T  37373115 catcaacggatttgttatgtctgatatcagcaaatcttc 37373153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 3689968 - 3690193
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    ||||| |||||||||||||| ||||||||| |||||| |||||||||| | | ||||||||  ||||||||||||||||||||||||||||| ||||| |    
T  3689968 ttttcgcccgatcgacaaactgaatcagagcttaaatactctttctctccacttggaatcactgacatcatatattcgttaacatgctcaaccgaatcaa 3690067  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    ||||||||||||||||||   ||||||| ||||| || |||||||||| ||||||||||||||||||||| |||||||| || ||||||||||||| |||    
T  3690068 gcgttggtgcgagtattcacttttcttgaaaaaagagtgggtcaccaatgttatcattcaaatcgggatatacaaagtccattagtgacatcaacgaatt 3690167  T
Q  224 tgttgtgttcgatatgagtaaatctt 249  Q
    |||||| |  |||||||| |||||||    
T  3690168 tgttgtatcggatatgagcaaatctt 3690193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 3876819 - 3876594
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    ||||| |||||||||||||| ||||||||| |||||| |||||||||| | | ||||||||  ||||||||||||||||||||||||||||| ||||| |    
T  3876819 ttttcgcccgatcgacaaactgaatcagagcttaaatactctttctctccacttggaatcactgacatcatatattcgttaacatgctcaaccgaatcaa 3876720  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    ||||||||||||||||||   ||||||| ||||| || ||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||||| |||    
T  3876719 gcgttggtgcgagtattcacttttcttgaaaaaagagtgggtccccaatgttatcattcaaatcgggatatacaaagtccattagtgacatcaacgaatt 3876620  T
Q  224 tgttgtgttcgatatgagtaaatctt 249  Q
    |||||| |  |||||||| |||||||    
T  3876619 tgttgtatcggatatgagcaaatctt 3876594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 37261294 - 37261482
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||| |||||||||||||| |||| |||||    
T  37261294 tggacatcaaaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 37261393  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaag 200  Q
    |||||||||| || ||||| || |||||||| |||||||| |||||||  ||||||  ||||||||||||||||| |||||||||||||    
T  37261394 caactgaatcaagtgttggcgcaagtattcccctttcttgaaaaaataacgggtcattaaggttatcattcaaattgggatacacaaag 37261482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 24630101 - 24629954
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  24630101 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 24630002  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaata 159  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  24630001 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 24629954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 10025042 - 10025189
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||||  ||||||||||||||||||||||| |    
T  10025042 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacttggaatcaatgacatcatatattcgttaacatgtt 10025141  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaata 159  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10025142 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 10025189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 30346784 - 30346637
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  30346784 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 30346685  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaata 159  Q
    ||||| |||| || ||||||||||||||||| ||||||||||||||||    
T  30346684 caacttaatcaagtgttggtgcgagtattcccctttcttggaaaaata 30346637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 6089201 - 6089230
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagag 53  Q
    ||||||||||||||||||||||||||||||    
T  6089201 ttttcacccgatcgacaaacagaatcagag 6089230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 48238717 - 48238519
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48238717 tggacatcaaagttttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 48238618  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtg 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48238617 caactgaatcaagcgttggtgcgagtattcctctttcttggaaaaatagagggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtg 48238519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 2453357 - 2453119
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||||||||| ||||||||||  ||||| |||||||||||| |||||||| || |||||||||||||||||||||||||    
T  2453357 tggacatcagaattttcacccgatcgacaaatagaatcagagcctaaatactctttctcttcacctggaattagtgacatcatatattcgttaacatgct 2453258  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||||| |||  |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  2453257 caactcaataaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcggaattcacaaagtctataagtga 2453158  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  2453157 catcaacggatttgttgtgttcgatatgagcaaatcttc 2453119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 2329148 - 2329383
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2329148 tggacatcagaattttcacccgatcgacaaagagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 2329247  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    | |||||||| |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||   ||||||||||||    
T  2329248 cgactgaatcaagcgttggtgcgagtattcccctttcttgaaaaaatagtggatcaccaaggttatcattcaaatcgggatacac---gtctataagtga 2329344  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  2329345 catcaacggatttgttgtgtccgatatgagaaaatcttc 2329383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 36207194 - 36207429
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||||||||||| ||||| || |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  36207194 tggacatcataattttcacccgatcgacaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 36207293  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |  ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36207294 caactgaatcaattgttggggcgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 36207393  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatc 247  Q
    ||||||||||||||||||||  |||||||| |||||    
T  36207394 catcaacggatttgttgtgtcggatatgagaaaatc 36207429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 37390389 - 37390154
Alignment:
Q  15 acatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaa 114  Q
    |||||| | ||||||||||||| | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  37390389 acatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaa 37390290  T
Q  115 ctgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacat 214  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37390289 ctgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacat 37390190  T
Q  215 caacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||||  ||||| || ||||||||    
T  37390189 caacggatttgttgtgtctgatatcagcaaatcttc 37390154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 18148679 - 18148905
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    |||||| |||||||||||||||||| |||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |    
T  18148679 ttttcatccgatcgacaaacagaataagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaaatgaatcaa 18148778  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||    
T  18148779 gcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaattgagatacacaaagtcgataagtgacatcaacagatt 18148878  T
Q  224 tgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||| ||||||||| ||||||||    
T  18148879 tgttgtgtccgatatgagaaaatcttc 18148905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 16042004 - 16042242
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  16042004 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgct 16042103  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||||||  || |||||||||||||||||| || ||||||||||||||||||||| ||    
T  16042104 caactgaatcaagcgttggtgcgagtattcccctttcttggcaaaatagctgggcaccaaggttatcattcagattgggatacacaaagtctataagcga 16042203  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||||||| |||||| || ||||||||    
T  16042204 catcaacggatttgttgtgtccgatatcagcaaatcttc 16042242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 6311235 - 6311015
Alignment:
Q  12 tggacatcaaagttttcacccgatcg-acaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgc 110  Q
    ||||||||| | |||||||||||||  | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  6311235 tggacatcagaattttcacccgatctcaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgc 6311136  T
Q  111 tcaactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtg 210  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6311135 tcaactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtg 6311036  T
Q  211 acatcaacggatttgttgtgt 231  Q
    |||||||||||||||||||||    
T  6311035 acatcaacggatttgttgtgt 6311015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 48775575 - 48775337
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||  |||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||   ||||||||||||||||||||||||    
T  48775575 tggacatcagactttttgcccgatcgacaaactgaatcagagcttaaatactctttctcttcacctggaatcatttacatcatatattcgttaacatgct 48775476  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||| ||||| ||||||||||||||||||||  ||||||||||||| ||  ||||||||| |||||||||| |||||||||| ||||||| ||| |||||    
T  48775475 caaccgaatcaagcgttggtgcgagtattcccttttcttggaaaaagagcaggtcaccaatgttatcattctaatcgggatatacaaagtgtattagtga 48775376  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||| | |||||||||||  |||||||| ||||||||    
T  48775375 catcaaagaatttgttgtgtcggatatgagcaaatcttc 48775337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 52500648 - 52500795
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  52500648 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 52500747  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaata 159  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  52500748 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 52500795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 48233498 - 48233595
Alignment:
Q  153 aaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48233498 aaaaatagagggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcagcggatttgttgtgttcgatatgagtaaatcttc 48233595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 186546 - 186771
Alignment:
Q  25 tttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcgag 124  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||    
T  186546 tttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcagctgaatcaag 186645  T
Q  125 cgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggattt 224  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  186646 cgttggtgcgagtattcccctttattggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacagattt 186745  T
Q  225 gttgtgttcgatatgagtaaatcttc 250  Q
    ||||||| ||||||||| ||||||||    
T  186746 gttgtgtacgatatgagcaaatcttc 186771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 25218805 - 25218567
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  25218805 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 25218706  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25218705 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 25218606  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||  ||||| || ||||||||    
T  25218605 catcaacggatttgttgtgtctgatatcagcaaatcttc 25218567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 21113984 - 21113746
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  21113984 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 21113885  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| ||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  21113884 caactgaatcaagcgttggtgcaagtattccccttttttggaaaaatagcgggtcaccaaggttatcattcaaatcaagatacacaaagtctataagtga 21113785  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||| |||||||||||| |||||| || ||||||||    
T  21113784 catcaacagatttgttgtgtccgatataagcaaatcttc 21113746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 7821817 - 7822055
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| | ||| |||||||||| |||||| |||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  7821817 tggacatcagaattttcacccgatctaaaaatagaatcagagcttaaatactctttctcttcacctgaaatcagcgacatcataaattcgttaacatgct 7821916  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  7821917 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcggaatacacaaagtctataagtga 7822016  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||| ||||| || ||||||||    
T  7822017 catcaacggatttgttgtgtttgatatcagcaaatcttc 7822055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 30307156 - 30307394
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| | ||| |||||| ||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  30307156 tggacatcagaattttcacccgatctaaaaatagaatcggagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 30307255  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  30307256 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcgttcagatcgggatacacaaagtctataagtga 30307355  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||||||| |||||| || ||||||||    
T  30307356 catcaacggatttgttgtgtccgatatcagcaaatcttc 30307394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 31978755 - 31978549
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    ||||| ||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||| |    
T  31978755 ttttcccccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaatttgttgacatgctcaactgaatcaa 31978656  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    |||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  31978655 gcgttgatgcgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtttataagtgacatcaacagatt 31978556  T
Q  224 tgttgtg 230  Q
    |||||||    
T  31978555 tgttgtg 31978549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 25209272 - 25209103
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||| ||||||| | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  25209272 tggacatcagaattttcgcccgatctaaaaatagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 25209173  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcatt 181  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  25209172 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcatt 25209103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 25209102 - 25209068
Alignment:
Q  197 aaagtctataagtgacatcaacggatttgttgtgt 231  Q
    |||||||||||||||||||||||||||||||||||    
T  25209102 aaagtctataagtgacatcaacggatttgttgtgt 25209068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 1860656 - 1860893
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| ||  ||||||| |||||||||||||||||||||||||    
T  1860656 tggacatcagaattttcacccgatcaacaaacagaatcagagcttaaatactctttctcttcacccagaatcagtgacatcatatattcgttaacatgct 1860755  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1860756 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtga 1860855  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatctt 249  Q
    ||||||| |||||||||||| ||||||||| |||||||    
T  1860856 catcaacagatttgttgtgtccgatatgagcaaatctt 1860893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 49710152 - 49710389
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  49710152 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 49710251  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49710252 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 49710351  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||| ||||||||||||| |||||| || ||||||||    
T  49710352 catcaa-ggatttgttgtgtccgatatcagcaaatcttc 49710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 35855886 - 35856124
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  35855886 tggacatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 35855985  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35855986 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 35856085  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||  ||||| || ||||||||    
T  35856086 catcaacggatttgttgtgtctgatatcagcaaatcttc 35856124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 38518075 - 38518313
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  38518075 tggacatcagaattttcacccgatctaaaaatagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 38518174  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  38518175 caattgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcatttagatcgggatacacaaagtctataagtga 38518274  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||  ||||| || ||||||||    
T  38518275 catcaacggatttgttgtgtctgatatcagcaaatcttc 38518313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 49787068 - 49786830
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||| |||| | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  49787068 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaatatgct 49786969  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| ||||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  49786968 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtga 49786869  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||  ||||| || ||||||||    
T  49786868 catcaacggatttgttgtgtctgatatcagcaaatcttc 49786830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 55559278 - 55559131
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  55559278 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 55559179  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaata 159  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  55559178 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 55559131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 118 - 250
Target Start/End: Original strand, 13337320 - 13337452
Alignment:
Q  118 aatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaa 217  Q
    |||| ||||||| |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  13337320 aatcaagcgttgatgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacataaa 13337419  T
Q  218 cggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||| |||||| || ||||||||    
T  13337420 cggatttgttgtgtccgatatcagcaaatcttc 13337452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 618270 - 618226
Alignment:
Q  206 aagtgacatcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||||    
T  618270 aagtgacatgaacggatttgttgtgtccgatatgagcaaatcttc 618226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 5499 - 5262
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||| |||| |||||| |||||||||||||||||||||||||    
T  5499 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctgaaatcagtgacatcatatattcgttaacatgct 5400  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5399 caactgaatcaagcgttggtgcgagtattcccctttcttgg-aaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtga 5301  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||  |||||||||||| ||||||||| ||||||||    
T  5300 catcaatagatttgttgtgtccgatatgagcaaatcttc 5262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 5828795 - 5828557
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  5828795 tggacatcataattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 5828696  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5828695 caactgagtcaagtgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtga 5828596  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||  |||||||||||| ||||||||| ||||||||    
T  5828595 catcaaaagatttgttgtgtccgatatgagcaaatcttc 5828557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 21070302 - 21070064
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    |||||||| || ||||||||||||| |||||||||||||||| |||||| |||||||||||| || |||||||| |||||||||||||||||||||||||    
T  21070302 tggacatctaaattttcacccgatcaacaaacagaatcagagcttaaatactctttctcttcaccaggaatcagtgacatcatatattcgttaacatgct 21070203  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  ||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  21070202 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcaggttaccaaggttatcattcagatcgggatacacaaagtctataagtga 21070103  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||  |||||||| ||||||||    
T  21070102 catcaacggatttgttgtgtctgatatgagcaaatcttc 21070064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 7036699 - 7036918
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  7036699 tggacatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 7036798  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7036799 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaagtagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 7036898  T
Q  212 catcaacggatttgttgtgt 231  Q
    ||||||||||||||||||||    
T  7036899 catcaacggatttgttgtgt 7036918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 12781389 - 12781169
Alignment:
Q  12 tggacatcaaagttttcacccgatcg-acaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgc 110  Q
    ||||||||| | |||||||||||||  | ||| |||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  12781389 tggacatcagaattttcacccgatctcaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgc 12781290  T
Q  111 tcaactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtg 210  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12781289 tcaactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtg 12781190  T
Q  211 acatcaacggatttgttgtgt 231  Q
    |||||||||||||||||||||    
T  12781189 acatcaacggatttgttgtgt 12781169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 9001385 - 9001159
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  9001385 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 9001286  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||| ||| ||||||||| |||||||||||||| ||    
T  9001285 caactgaatcaagcgttagtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcaatcagatcgggataaacaaagtctataagaga 9001186  T
Q  212 catcaacggatttgttgtgttcgatat 238  Q
    |||||||||||||||||||| ||||||    
T  9001185 catcaacggatttgttgtgtccgatat 9001159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 22843795 - 22844021
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    |||||||||||||||||||||||| ||||  |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |    
T  22843795 ttttcacccgatcgacaaacagaaacagaacttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaatcaa 22843894  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||    
T  22843895 gcgttggtgcgagtattcccctttcttggaaaaatagcaggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacagatt 22843994  T
Q  224 tgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||  |||||||| ||||||||    
T  22843995 tgttgtgtcagatatgagcaaatcttc 22844021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 12786218 - 12785980
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||| |||| | ||| |||||||||| |||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  12786218 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 12786119  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| ||||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  12786118 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtga 12786019  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||| ||||| || ||||||||    
T  12786018 catcaacggatttgttgtgtttgatatcagcaaatcttc 12785980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 42232063 - 42232210
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  42232063 tggacatcagaattttcacccgagcgacaaacaaaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 42232162  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaata 159  Q
    |||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  42232163 caactgaatcaagcgttggtgagagtattcccctttcttggaaaaata 42232210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 18939139 - 18939184
Alignment:
Q  162 gggtcaccaaggttatcattcaaatcgggatacacaaagtctataa 207  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  18939139 gggttaccaaagttatcattcaaatcgggatacacaaagtttataa 18939184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 50410151 - 50410389
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  50410151 tggacatcagaattttcacccgatcgacaaagagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatatttgttaacatgct 50410250  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    | |||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50410251 cgactgaatcaagcgttggtgcgagtattcccctttcttgaaaaaatagtgggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtga 50410350  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||| |||||||||||||| ||||||||| ||||||||    
T  50410351 catcagcggatttgttgtgtccgatatgagaaaatcttc 50410389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 32750 - 32988
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| | ||| |||||||||| |||||| |||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  32750 tggacatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgct 32849  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  32850 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtccataagtga 32949  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||| ||||| || ||||||||    
T  32950 catcaacggatttgttgtgtttgatatcagcaaatcttc 32988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 10110579 - 10110817
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| ||||||| ||||| || |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10110579 tggacatcagaattttcacccgatcaacaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 10110678  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  10110679 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtga 10110778  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||| ||||||||| ||  |||||||| ||||||||    
T  10110779 catcaacagatttgttgcgtctgatatgagcaaatcttc 10110817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 52918045 - 52918264
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  52918045 tggacatcagaattttcacccgatcgacaaacaaaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 52918144  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||     
T  52918145 caactgaatcaagcgttggtgcgggtattcccctttcttggaaaaatagcgagtcaccaaggttatcattcaaatcgggatacacgaagtctataagtgg 52918244  T
Q  212 catcaacggatttgttgtgt 231  Q
    ||||||| ||||||||||||    
T  52918245 catcaacagatttgttgtgt 52918264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 10000386 - 10000624
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| ||||||| ||||| || |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10000386 tggacatcagaattttcacccgatcaacaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 10000485  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  10000486 caactgaatcaagcgttggtgcgagtattcctctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtga 10000585  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
     |||||| |||||||||  |  |||||||| ||||||||    
T  10000586 tatcaacagatttgttgcatctgatatgagcaaatcttc 10000624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 13530018 - 13530256
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    |||||| |||| |||||||| ||||||||| ||||| ||||| |||||| |||||||||||| |||||| |||| ||||||||||||||||||| |||||    
T  13530018 tggacaccaaaattttcacctgatcgacaagcagaaccagagcttaaatactctttctcttcacctggactcagtgacatcatatattcgttaaaatgct 13530117  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||  || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13530118 caactgaatgaagtgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 13530217  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||  |||||||  ||||||||    
T  13530218 catcaacggatttgttgtgtctgatatgaccaaatcttc 13530256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 10969021 - 10968785
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||||||||||| ||| |||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10969021 tggacatcagaattttcacccgatcgacaaacaaaataagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 10968922  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
     ||||||||| |||||||||||||||||||| ||| ||| |||||||||  |||||| ||| |||||||||||||||||||||||||||||||||||||     
T  10968921 aaactgaatcaagcgttggtgcgagtattccccttgcttagaaaaatagcaggtcacgaagtttatcattcaaatcgggatacacaaagtctataagtgg 10968822  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatct 248  Q
    |||||||||||||||||||| |||||| || ||||||    
T  10968821 catcaacggatttgttgtgtccgatatcagcaaatct 10968785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 10237535 - 10237772
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| ||||||| ||||| || |||| | |||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  10237535 tggacatcagaattttcacccgatcaacaaacataatcaaagcttaa-tactctttctcttcacctggaatcagtaacatcatatattcgttaacatgct 10237633  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  10237634 caactgaatcaagcgttggtgcgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtga 10237733  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||| ||||||||| ||  |||||||| || |||||    
T  10237734 catcaacagatttgttgcgtctgatatgagcaattcttc 10237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 11368638 - 11368865
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    ||||||||| |||||||||  ||||||||| |||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||| |    
T  11368638 ttttcacccaatcgacaaattgaatcagagcttaaatactctttctcttcacctggaatcactgacatcatatattcgttaacatgctcaaccgaatcaa 11368737  T
Q  124 gcgttggtgcgagtattcctctttcttgg-aaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggat 222  Q
    |||||||||||||||||||  |||||||| ||||| || |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  11368738 gcgttggtgcgagtattcccttttcttggaaaaaagagcgggtcaccaatgttatcattcaaatcgggatatacaaagtctatgagtgacatcaacggat 11368837  T
Q  223 ttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||  |||||||| ||||||||    
T  11368838 ttgttgtgtcggatatgagcaaatcttc 11368865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 11362239 - 11362476
Alignment:
Q  14 gacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgc-tctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctc 112  Q
    ||||||| | ||||| |||||||||||||| ||||||||| |||||    ||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  11362239 gacatcagacttttcgcccgatcgacaaactgaatcagagcttaaaaaaatctttctcttcacctggaatcactgacatcatatattcgttaacatgctc 11362338  T
Q  113 aactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgac 212  Q
    ||| ||||| ||||||||||||||||||||  |||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||    
T  11362339 aaccgaatcaagcgttggtgcgagtattcccttttcttggaaaaatagtgggtcaccaatgttatcatttaaatcgggatatacaaagtctattagtgac 11362438  T
Q  213 atcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||| ||||||||| |  |||||||||||||||||    
T  11362439 atcaacgaatttgttgtatcggatatgagtaaatcttc 11362476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 46913050 - 46913245
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||| | ||||||||||||||| ||||| || |||||| || ||| ||||| ||||||||  | |||||||||||||||||||||||||    
T  46913050 tggacatcagaatttccccccgatcgacaaacataatcaaagcttaaatactatttttcttcacctggaattggtgacatcatatattcgttaacatgct 46913149  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataa 207  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  46913150 caactgaatcaagcgttggtgcgagtattctcctttcttggaaaaatagcgggtcgccaaagttatcattcaaatcgggatacacaaagtctataa 46913245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 10038631 - 10038807
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    ||||||||||||||||||||||||| |||| ||||||  | ||||||||| ||||||||||| |||||||||||||| |||| |||||||| |||||| |    
T  10038631 ttttcacccgatcgacaaacagaatgagagcttaaataatatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaattgaatcaa 10038730  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaag 200  Q
    | ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||    
T  10038731 gtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaattgggatacacaaag 10038807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 47692948 - 47693115
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||  ||||||||||||||||||||||| |||||| |||||||||||| |||||||| || |||||||| ||||||||||||||||    
T  47692948 tggacatcagaattttcgtccgatcgacaaacagaatcagaggttaaatactctttctcttcacctggaattagtgacatcatgtattcgttaacatgct 47693047  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatca 179  Q
    |||||||||| |||||||||||||| ||||| ||||||||| ||||| | ||||||||||||||||||    
T  47693048 caactgaatcaagcgttggtgcgaggattcccctttcttgggaaaattgtgggtcaccaaggttatca 47693115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 18988 - 19223
Alignment:
Q  15 acatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaa 114  Q
    |||||| | ||||||| |||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  18988 acatcagaattttcactcgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaa 19087  T
Q  115 ctgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacat 214  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  19088 ctgaatcaagcgttggtgcgagtattccccttttttggaaaaatagcgggtcaccaaggttatcattcaaatcaagatacacaaagtctataagtgacat 19187  T
Q  215 caacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||  ||||||||||| ||||||||| ||||||||    
T  19188 caacatatttgttgtgtccgatatgagcaaatcttc 19223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 991 - 1217
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    ||||| |||||| |||||||| |||||||| |||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||  |    
T  991 ttttcgcccgattgacaaacaaaatcagagcttaaatactctttctcttcacttggaatcagtgacatcatatattcgttaacatgctcgactgaattaa 1090  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1091 gcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 1190  T
Q  224 tgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||| ||||||||| ||||||||    
T  1191 tgttgtgtccgatatgagcaaatcttc 1217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 31912 - 32149
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| |||||||||||||||    
T  31912 tggacatcagaattttcacccgatctacaaacagaatcagagtttaaatactctttctcttcacctggaatcagcaacatcataaattcgttaacatgct 32011  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| ||||||||||| |||| ||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32012 caactgaatcaagcgttggtgcaagta-tcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 32110  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||||||| |||||| || ||||||||    
T  32111 catcaacggatttgttgtgtccgatatcagcaaatcttc 32149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 19436 - 19662
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||| ||| |||||||    
T  19436 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaatttgttgacatgct 19535  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  19536 caactgaatcaagcgttgatgcgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtttataagtga 19635  T
Q  212 catcaacggatttgttgtgttcgatat 238  Q
    ||||||| |||||||||||| ||||||    
T  19636 catcaacagatttgttgtgtccgatat 19662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 321576 - 321338
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||| |||||||||||| |||| ||||||||| |||||| |||||||||||||||    
T  321576 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctgaaatcagcgatatcataaattcgttaacatgct 321477  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  321476 caactgaatcaagcattggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacaaaaagtctataagtga 321377  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||| ||| |||||| || ||||||||    
T  321376 catcaacggatttgttttgtccgatatcagcaaatcttc 321338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 18109 - 17878
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||||||||| |||||||||||| || |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18109 tggacatcataattttcacccgatcggcaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 18010  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||||| |||| |||||||||||||||||||| ||||||||       || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  18009 caactaaatcaagcgttggtgcgagtattcccctttcttg-------agcggatcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 17917  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  17916 catcaacggatttgttgtgtccgatatgagcaaatcttc 17878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 49176 - 48938
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | |||||||| |||| | ||| |||||||||| |||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  49176 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 49077  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    ||| |||||| ||||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  49076 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtga 48977  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||||||||||||||| ||||| || ||||||||    
T  48976 catcaacggatttgttgtgtttgatatcagcaaatcttc 48938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 812 - 574
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||||||| ||| |||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||| |||| ||||||||||    
T  812 tggacatcagaattttcacccaatctacaaacagaatcagaggttaaatactctttcttttcacctggaatcagcgacatcataaattcattaacatgct 713  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  712 caactgaatcaagcgttggtgcgagtattcccctttattggaaaaatagctggtcaccaaggttatcatttagatcgggatacacaaagtttataagtga 613  T
Q  212 catcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||||| ||||||||||  ||||| || ||||||||    
T  612 catcaacgggtttgttgtgtctgatatcagcaaatcttc 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 182802 - 183028
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    ||||| |||||||||||||| ||||||||| |||||| |||||||||||| | ||||||||  ||||||||||||||||||||||||||||| ||||| |    
T  182802 ttttcgcccgatcgacaaactgaatcagagcttaaatactctttctcttcacttggaatcactgacatcatatattcgttaacatgctcaaccgaatcaa 182901  T
Q  124 gcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcaacggatt 223  Q
    |||||||||||||||||||  ||||||||||||| || |||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||| |||    
T  182902 gcgttggtgcgagtattcccttttcttggaaaaagagtgggtcaccaatgatatcattcaaatcgggatatacaaagtctattagtgacatcaacgaatt 183001  T
Q  224 tgttgtgttcgatatgagtaaatcttc 250  Q
    |||||| |  |||||||| ||||||||    
T  183002 tgttgtatcggatatgagcaaatcttc 183028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 165511 - 165748
Alignment:
Q  14 gacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgc-tctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctc 112  Q
    ||||||| | ||||| |||||||||||||| ||||||||| |||||    ||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  165511 gacatcagacttttcgcccgatcgacaaactgaatcagagcttaaaaaaatctttctcttcacctggaatcactgacatcatatattcgttaacatgctc 165610  T
Q  113 aactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgac 212  Q
    ||| ||||| ||||||||||||||||||||  |||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||    
T  165611 aaccgaatcaagcgttggtgcgagtattcccttttcttggaaaaatagtgggtcaccaatgttatcatttaaatcgggatatacaaagtctattagtgac 165710  T
Q  213 atcaacggatttgttgtgttcgatatgagtaaatcttc 250  Q
    ||||||| ||||||||| |  |||||||||||||||||    
T  165711 atcaacgaatttgttgtatcggatatgagtaaatcttc 165748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 16663 - 16889
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||| | ||||| | |||| || ||||||||||| || |||||  |||||||||||| ||| ||||||| || ||||||||| ||||||||| ||    
T  16663 tggacatcagaattttcgctcgattgaaaaacagaatcatagcttaaaaactctttctcttcacctagaatcagtgaaatcatatatgcgttaacatact 16762  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 211  Q
    | ||| |||  |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16763 ccactaaattaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaagttatcattcaaatcgggatacacaaagtctataagtga 16862  T
Q  212 catcaacggatttgttgtgttcgatat 238  Q
    |||||||||||||||||||| ||||||    
T  16863 catcaacggatttgttgtgtccgatat 16889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 28874 - 28727
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 111  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  28874 tggacatcaaaattttcacccaagcgacaaacagaatcagagtttaaatactttttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 28775  T
Q  112 caactgaatcgagcgttggtgcgagtattcctctttcttggaaaaata 159  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28774 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 28727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 130 - 24
Alignment:
Q  24 ttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcagcgacatcatatattcgttaacatgctcaactgaatcga 123  Q
    ||||||||||||||||| ||| |||||||| |||||| |||||||||  | |||| |||||| |||||| |||||||||||||||||||||||||||| |    
T  130 ttttcacccgatcgacatacaaaatcagagcttaaatactctttctcgccacctgaaatcagtgacatcgtatattcgttaacatgctcaactgaatcaa 31  T
Q  124 gcgttgg 130  Q
    || ||||    
T  30 gccttgg 24  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 1627 - 1700
Alignment:
Q  12 tggacatcaaagttttcacccgatcgacaaacagaatcagagtttaaatgctctttctcttcgcctggaatcag 85  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||||| | |||||||||| |||||||||||    
T  1627 tggacatcaaaattttcacccgatcgataaacataatcagagtttaaatacgctttctcttcacctggaatcag 1700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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