View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_89 (Length: 248)
Name: NF6869A_low_89
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_89 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 33064122 - 33063877
Alignment:
| Q |
1 |
aatatcatgcccagtatgaacagtatttaacggacatttatttgatcaactgttgtacaagatcagttcagttagaatgaatgatttaatacgttatgtt |
100 |
Q |
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| T |
33064122 |
aatatcatgcccagtatgaacagtatttaacggacatttatttgatcaactgttgtacaagatcagttcagttagaatgaatgatttaatatgttatgtt |
33064023 |
T |
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| Q |
101 |
tttagaaaacggtatagataaccatcatcatgcatcagaaagactgagagtatatagtatggtcaaatattagcannnnnnnnnataaaaagaaggccat |
200 |
Q |
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| T |
33064022 |
tttagaaaacggtatagataaccatcatcatgcatcagaaagactgagagtatatagtattgtcaaatattagca-tttttttaataaaaagaaggccat |
33063924 |
T |
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| Q |
201 |
tgtcaatgattataagagttagtccgtcccgagctaaaactcatttg |
247 |
Q |
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| T |
33063923 |
tgtcaatgattataagagtcagtccgtcccgagctaaaactcatttg |
33063877 |
T |
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