View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_90 (Length: 248)
Name: NF6869A_low_90
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 54793601 - 54793816
Alignment:
| Q |
14 |
gaatgggagaccttgatgagaagatttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
113 |
Q |
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| T |
54793601 |
gaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
54793700 |
T |
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| Q |
114 |
ttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54793701 |
ttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgttt |
54793800 |
T |
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| Q |
214 |
ttgaagtagctatgct |
229 |
Q |
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|||||||||||||||| |
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| T |
54793801 |
ttgaagtagctatgct |
54793816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 52286282 - 52286496
Alignment:
| Q |
14 |
gaatgggagaccttgatgagaagatttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgt |
113 |
Q |
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||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
52286282 |
gaatgggagaccttgatcagaaagtttttgtgaatgtctgcaagaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgctcttt |
52286381 |
T |
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| Q |
114 |
ttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttt |
213 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
52286382 |
ttggcaggagaatgtgaagaattcagcttggcacccttttaaagtcgtcagagagaatgatagccatgtggtatgtaccataaagacatgctctgtgttt |
52286481 |
T |
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| Q |
214 |
ttgaagtagctatgc |
228 |
Q |
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||| ||||| ||||| |
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| T |
52286482 |
ttgcagtagttatgc |
52286496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 54775932 - 54775823
Alignment:
| Q |
120 |
ggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaag |
219 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775932 |
ggagcatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgtttttgaag |
54775833 |
T |
|
| Q |
220 |
tagctatgct |
229 |
Q |
| |
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|||||||||| |
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| T |
54775832 |
tagctatgct |
54775823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 801450 - 801656
Alignment:
| Q |
16 |
atgggagaccttgatgagaagatttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgttt |
115 |
Q |
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|||||||||||||| ||||| |||||||| | | |||||||||||||||| |||| || ||||||||||| |||||| | |||||||||||| | | |
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| T |
801450 |
atgggagaccttgaccagaaggtttttgtgaatgcctgcaagaaaagattttcttct---gatgaagctgggataaaggccgttgagctttgctctttat |
801546 |
T |
|
| Q |
116 |
ggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttttt |
215 |
Q |
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||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||| | | |||||||||| ||||| |||||||||||||||| |
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| T |
801547 |
ggcaggaaaatgtgaagaactcagcttggcacccttttaaagtggtcagtcagaatgataaccccgtggtatgtaccctaaagccatgctctgtgttttt |
801646 |
T |
|
| Q |
216 |
gaagtagcta |
225 |
Q |
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| ||| |||| |
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| T |
801647 |
ggagtggcta |
801656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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