View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6869A_low_92 (Length: 247)

Name: NF6869A_low_92
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6869A_low_92
NF6869A_low_92
[»] chr3 (20 HSPs)
chr3 (125-231)||(15870839-15870941)
chr3 (122-231)||(15871305-15871410)
chr3 (66-123)||(19150335-19150392)
chr3 (66-127)||(41448192-41448253)
chr3 (66-122)||(19623268-19623324)
chr3 (75-118)||(11323912-11323955)
chr3 (83-126)||(34271523-34271566)
chr3 (83-122)||(38359339-38359378)
chr3 (75-122)||(47187545-47187592)
chr3 (75-121)||(9327010-9327056)
chr3 (76-122)||(31143269-31143315)
chr3 (66-100)||(37073681-37073715)
chr3 (75-121)||(39284692-39284738)
chr3 (64-118)||(42672239-42672293)
chr3 (66-120)||(45657786-45657840)
chr3 (66-126)||(29573372-29573432)
chr3 (66-122)||(37894259-37894315)
chr3 (66-122)||(38017943-38017999)
chr3 (83-127)||(44334834-44334878)
chr3 (66-122)||(48405409-48405465)
[»] chr6 (8 HSPs)
chr6 (66-129)||(20029253-20029316)
chr6 (83-125)||(2241840-2241882)
chr6 (66-118)||(13093629-13093681)
chr6 (66-130)||(17551395-17551459)
chr6 (84-128)||(31417330-31417374)
chr6 (75-122)||(31883329-31883376)
chr6 (84-122)||(1196057-1196095)
chr6 (66-122)||(8505790-8505846)
[»] chr7 (15 HSPs)
chr7 (75-118)||(23816284-23816327)
chr7 (64-122)||(48395247-48395305)
chr7 (66-122)||(8352773-8352829)
chr7 (84-122)||(39875832-39875870)
chr7 (84-128)||(21839156-21839200)
chr7 (66-121)||(6427210-6427265)
chr7 (66-121)||(7212683-7212738)
chr7 (66-121)||(48314377-48314432)
chr7 (66-123)||(2008874-2008931)
chr7 (84-121)||(8459614-8459651)
chr7 (66-115)||(45606890-45606939)
chr7 (82-122)||(9363386-9363426)
chr7 (74-126)||(11813340-11813392)
chr7 (83-123)||(21752656-21752696)
chr7 (66-122)||(41750114-41750170)
[»] chr2 (20 HSPs)
chr2 (66-121)||(24727606-24727661)
chr2 (76-123)||(37767792-37767839)
chr2 (75-125)||(43820766-43820816)
chr2 (76-124)||(13453981-13454029)
chr2 (75-123)||(31227575-31227623)
chr2 (66-121)||(25507255-25507310)
chr2 (64-123)||(43057062-43057121)
chr2 (66-128)||(7258578-7258640)
chr2 (75-121)||(40874286-40874332)
chr2 (66-122)||(22966785-22966841)
chr2 (83-126)||(34913087-34913130)
chr2 (84-122)||(19695714-19695752)
chr2 (66-123)||(44977516-44977574)
chr2 (76-121)||(15123962-15124007)
chr2 (83-123)||(4036909-4036949)
chr2 (66-122)||(5031922-5031978)
chr2 (66-122)||(6336251-6336307)
chr2 (75-123)||(31415240-31415288)
chr2 (84-120)||(39285854-39285890)
chr2 (66-122)||(40106608-40106664)
[»] chr1 (20 HSPs)
chr1 (75-122)||(33694226-33694273)
chr1 (66-122)||(42577471-42577527)
chr1 (66-121)||(49931553-49931608)
chr1 (64-124)||(16583075-16583135)
chr1 (66-122)||(30535990-30536046)
chr1 (75-122)||(12021960-12022007)
chr1 (83-126)||(25989017-25989060)
chr1 (75-122)||(35883632-35883679)
chr1 (83-122)||(44672063-44672102)
chr1 (84-122)||(14983783-14983821)
chr1 (64-122)||(21433415-21433473)
chr1 (67-129)||(30467543-30467605)
chr1 (66-128)||(33675893-33675954)
chr1 (83-120)||(3558847-3558884)
chr1 (81-122)||(48872981-48873022)
chr1 (66-122)||(27742616-27742672)
chr1 (66-122)||(36750499-36750555)
chr1 (70-118)||(40434009-40434057)
chr1 (66-122)||(48858822-48858878)
chr1 (82-118)||(51231338-51231374)
[»] chr8 (22 HSPs)
chr8 (76-122)||(43066620-43066666)
chr8 (66-122)||(26629126-26629182)
chr8 (66-122)||(30170745-30170801)
chr8 (76-122)||(3155842-3155888)
chr8 (83-132)||(2667734-2667783)
chr8 (66-122)||(2730977-2731033)
chr8 (77-121)||(21526308-21526352)
chr8 (66-130)||(25830262-25830326)
chr8 (66-122)||(35792068-35792124)
chr8 (66-121)||(8835886-8835941)
chr8 (66-128)||(1068599-1068661)
chr8 (75-113)||(15116976-15117014)
chr8 (72-122)||(20996169-20996219)
chr8 (84-122)||(29107994-29108032)
chr8 (84-122)||(35500987-35501025)
chr8 (93-122)||(6511903-6511932)
chr8 (83-128)||(35634002-35634047)
chr8 (82-127)||(36064024-36064069)
chr8 (66-122)||(67177-67233)
chr8 (66-122)||(7376505-7376560)
chr8 (66-122)||(35067159-35067215)
chr8 (83-123)||(40102021-40102061)
[»] chr4 (31 HSPs)
chr4 (66-120)||(17367446-17367500)
chr4 (64-122)||(35206167-35206225)
chr4 (64-124)||(15638158-15638217)
chr4 (66-122)||(50831772-50831828)
chr4 (66-121)||(3078924-3078979)
chr4 (76-123)||(10762528-10762575)
chr4 (83-126)||(17363225-17363268)
chr4 (75-118)||(19899313-19899356)
chr4 (66-121)||(40693639-40693694)
chr4 (84-123)||(42915253-42915292)
chr4 (70-124)||(2004209-2004263)
chr4 (84-130)||(28480561-28480607)
chr4 (84-130)||(28481435-28481481)
chr4 (84-130)||(28482310-28482356)
chr4 (76-122)||(54222083-54222129)
chr4 (94-127)||(41010202-41010235)
chr4 (84-129)||(42490912-42490957)
chr4 (66-123)||(46355310-46355366)
chr4 (80-121)||(56215605-56215646)
chr4 (68-120)||(515642-515694)
chr4 (82-122)||(8026785-8026825)
chr4 (82-130)||(15522345-15522393)
chr4 (82-122)||(20760254-20760294)
chr4 (82-122)||(20766645-20766685)
chr4 (82-122)||(25221755-25221795)
chr4 (76-124)||(29963605-29963653)
chr4 (66-134)||(47288069-47288137)
chr4 (81-121)||(48099811-48099851)
chr4 (84-124)||(48494935-48494975)
chr4 (66-122)||(51734649-51734705)
chr4 (82-118)||(53190929-53190965)
[»] chr5 (20 HSPs)
chr5 (66-122)||(11148510-11148566)
chr5 (66-126)||(11306693-11306752)
chr5 (66-121)||(2629818-2629873)
chr5 (66-121)||(8728597-8728652)
chr5 (75-121)||(41621953-41621999)
chr5 (65-122)||(1293101-1293158)
chr5 (66-126)||(11881004-11881063)
chr5 (79-123)||(43057433-43057477)
chr5 (66-121)||(3109603-3109658)
chr5 (66-121)||(4800518-4800573)
chr5 (76-123)||(34270544-34270591)
chr5 (66-121)||(41460116-41460170)
chr5 (66-123)||(18695316-18695373)
chr5 (67-124)||(33191543-33191600)
chr5 (66-122)||(611863-611919)
chr5 (76-124)||(844033-844081)
chr5 (83-123)||(18706207-18706247)
chr5 (82-122)||(27487886-27487926)
chr5 (66-122)||(30838381-30838437)
chr5 (76-124)||(35475813-35475861)
[»] scaffold0115 (1 HSPs)
scaffold0115 (84-123)||(15222-15261)
[»] scaffold1625 (1 HSPs)
scaffold1625 (66-122)||(797-853)
[»] scaffold0194 (1 HSPs)
scaffold0194 (84-122)||(29795-29833)
[»] scaffold0432 (1 HSPs)
scaffold0432 (82-123)||(6552-6593)
[»] scaffold0014 (1 HSPs)
scaffold0014 (66-130)||(145052-145115)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 15870941 - 15870839
Alignment:
Q  125 ttttatatttagctacccctagtaatttatttatgtttggctatcccatgcttgatttaaggtgcaataatttttgtttaacttgggttatttttgtgtc 224  Q
    ||||||||||||||||||||||| ||||||    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  15870941 ttttatatttagctacccctagtcatttat----gtttggctatcccatgcttgagttaaggtgcaataatttttgtttaactttggttatttttgtgtc 15870846  T
Q  225 gaactcc 231  Q
    |||||||    
T  15870845 gaactcc 15870839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 15871410 - 15871305
Alignment:
Q  122 tatttttatatttagctacccctagtaatttatttatgtttggctatcccatgcttgatttaaggtgcaataatttttgtttaacttgggttatttttgt 221  Q
    ||||||||||||||||||||| ||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||     
T  15871410 tatttttatatttagctacccttagtaatttatat----ttggctatcccatgcttgatttaaggtgcaataatttttgtttaactttgattatttttgg 15871315  T
Q  222 gtcgaactcc 231  Q
    ||||||||||    
T  15871314 gtcgaactcc 15871305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 19150335 - 19150392
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||| |||||  |||||||||||||||| |||||||| ||||||||||||||||    
T  19150335 agagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctcta 19150392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 41448192 - 41448253
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctatttt 127  Q
    |||||||  |||||||||||||||||| |||| || ||||| ||||||||||||||||||||    
T  41448192 agagagagggttgtttcaaaagttgtttaaaaatggttgtacaaatatcatttctctatttt 41448253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 19623268 - 19623324
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||| | |||||| ||||||| | |||||||||||||| |||||||||||||||    
T  19623268 agagagattattgttttaaaagttatcaaaaagtgattgtacaaatatcatttctct 19623324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 11323955 - 11323912
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcattt 118  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||    
T  11323955 gttgtatcaaaagttgttaaaaagtggttgtacaaatatcattt 11323912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 34271523 - 34271566
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctctattt 126  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||    
T  34271523 aaaagttgttacaaagtggttgtacaaatatcatttctctattt 34271566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 38359339 - 38359378
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  38359339 aaaagttgttaaaaaatgattgtacaaatatcatttctct 38359378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 47187545 - 47187592
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||||| ||||||| |||||| |||||||||| ||||    
T  47187545 gttgtttcaaaagttgtgaaaaagtaattgtacaaatatcattcctct 47187592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 9327010 - 9327056
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||||||||||||  |||| |||||||| ||||||||||||||    
T  9327010 gttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 9327056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 31143315 - 31143269
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||||||||| ||||| |||||||| |||||||| ||||||    
T  31143315 ttgtttcaaaagttgtcaaaaaatgattgtacaaatatcacttctct 31143269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 37073715 - 37073681
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtg 100  Q
    |||||||||||||||||||||||||| ||||||||    
T  37073715 agagagaatgttgtttcaaaagttgtcaaaaagtg 37073681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 39284692 - 39284738
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    ||||||||||||||||| ||||||||| | || ||||||||||||||    
T  39284692 gttgtttcaaaagttgtcaaaaagtgaatatacaaatatcatttctc 39284738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 42672293 - 42672239
Alignment:
Q  64 taagagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcattt 118  Q
    ||||||| || |||||  ||||| || ||||||||||||||||||||||||||||    
T  42672293 taagagataaagttgtcacaaaaattattaaaaagtgattgtataaatatcattt 42672239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 45657786 - 45657840
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttct 120  Q
    |||||||| |||||  ||||| |||||| ||| ||||||||||||||||||||||    
T  45657786 agagagaacgttgtcacaaaaattgttagaaaatgattgtataaatatcatttct 45657840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 29573372 - 29573432
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattt 126  Q
    |||||||| |||||  |||||||||||| ||| || ||||| |||||||||||||| ||||    
T  29573372 agagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctcaattt 29573432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 37894259 - 37894315
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||||||| ||| || ||||| |||||||||||||||    
T  37894259 agagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctct 37894315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 38017943 - 38017999
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||  ||||||||| ||||||| ||| |||| ||||| |||||||||||||||    
T  38017943 agagagagagttgtttcataagttgtcaaagagtggttgtacaaatatcatttctct 38017999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 44334834 - 44334878
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctctatttt 127  Q
    ||||||||| | |||||| ||||| ||||||||||||||||||||    
T  44334834 aaaagttgtaataaagtggttgtacaaatatcatttctctatttt 44334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 48405465 - 48405409
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||| |||||||||| | ||| || ||||| |||||||||||||||    
T  48405465 agagagaaagttgttacaaaagttgtcacaaaatggttgtacaaatatcatttctct 48405409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 20029316 - 20029253
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattttta 129  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  20029316 agagagaaggttgtttcaaaagttgttaaaaagtggttgtataaatatcatttttcttttttta 20029253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 2241840 - 2241882
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctctatt 125  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  2241840 aaaagttgtcaaaaagtggttgtataaatatcatttctctatt 2241882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 13093681 - 13093629
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcattt 118  Q
    |||||||  ||||||||||||||||| |||||||| ||||| |||||||||||    
T  13093681 agagagagagttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 13093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 17551395 - 17551459
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctatttttat 130  Q
    |||||||| |||||| |||||||||| ||||| || ||||  ||||||||||||||| |||||||    
T  17551395 agagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctctttttttat 17551459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 31417330 - 31417374
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctctattttt 128  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||    
T  31417330 aaagttgtcataaaatgattgtataaatatcatttctctattttt 31417374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 31883329 - 31883376
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||| |||||||||| |||||||| ||||| |||||||||||||||    
T  31883329 gttgttacaaaagttgtcaaaaagtggttgtacaaatatcatttctct 31883376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 1196095 - 1196057
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  1196095 aaagttgtcaaaaagtgattgtacaaatatcatttctct 1196057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 8505790 - 8505846
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||||| ||||| |||||||  |||||||||||||||    
T  8505790 agagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctct 8505846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 23816327 - 23816284
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcattt 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  23816327 gttgttccaaaagttgttaaaaagtgattgtataaatatcattt 23816284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 48395305 - 48395247
Alignment:
Q  64 taagagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||  ||||||||||||||||| |||||||| ||||| |||||||||||||||    
T  48395305 taagagagagagttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 48395247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 8352829 - 8352773
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||  |||||||||||| |||| |||||||| |||||||||||||||||||||    
T  8352829 agagagatggttgtttcaaaaattgtcaaaaagtggttgtataaatatcatttctct 8352773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 39875832 - 39875870
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  39875832 aaagttgttaaaaagtggttgtataaatatcatttctct 39875870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 21839156 - 21839200
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctctattttt 128  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||    
T  21839156 aaagttgtcaaaaagtggttgtataaatatcatttttctattttt 21839200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 6427265 - 6427210
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||  ||||||  ||||||||| |||||||| ||||||||||||||||||||    
T  6427265 agagagagggttgttctaaaagttgtcaaaaagtggttgtataaatatcatttctc 6427210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 7212683 - 7212738
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||| ||||||| ||||||||| |||||||  ||||| ||||||||||||||    
T  7212683 agagagaaagttgttttaaaagttgtgaaaaagtagttgtacaaatatcatttctc 7212738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 48314377 - 48314432
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||  ||||||  |||||||||||||||||| ||||| ||||||||||||||    
T  48314377 agagagagggttgttgtaaaagttgttaaaaagtggttgtacaaatatcatttctc 48314432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 2008874 - 2008931
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||| |||||  |||||||||| |||||||| ||||  ||||||||||||||||    
T  2008874 agagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctcta 2008931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 8459651 - 8459614
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  8459651 aaagttgttaaaaagtggttgtacaaatatcatttctc 8459614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 45606939 - 45606890
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatca 115  Q
    |||||||  |||||| |||||||||| ||||||| |||||||||||||||    
T  45606939 agagagatagttgttccaaaagttgtaaaaaagttattgtataaatatca 45606890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 9363426 - 9363386
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||||| ||| |||||||| |||||||||||||||    
T  9363426 caaaagttgttataaaatgattgtacaaatatcatttctct 9363386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 11813392 - 11813340
Alignment:
Q  74 tgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattt 126  Q
    |||||||| |||||||||||||||||   |||| |||||| ||||||||||||    
T  11813392 tgttgtttaaaaagttgttaaaaagtaggtgtacaaatattatttctctattt 11813340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 21752696 - 21752656
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    ||||||||| | |||||||||||| ||||||||||||||||    
T  21752696 aaaagttgtgagaaagtgattgtacaaatatcatttctcta 21752656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 41750170 - 41750114
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| ||| || ||||||||||| |||| || |||| ||||||||||||||||    
T  41750170 agagagaaagttattacaaaagttgtttaaaaatggttgtttaaatatcatttctct 41750114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 24727606 - 24727661
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    ||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  24727606 agagagagtgttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 24727661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 37767792 - 37767839
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  37767792 ttgtttcaaaagttgtcaaaaagtggttgtataaatatcatttctcta 37767839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 43820766 - 43820816
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctatt 125  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  43820766 gttgtttcaaaagttgtaaaaaaatgattgtacaaatatcatttctctatt 43820816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 13453981 - 13454029
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||||    
T  13453981 ttgtttcaaaagttgtcaaaaagtgattgtacagatatcatttctctat 13454029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 31227575 - 31227623
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  31227575 gttgtttcaaaagttgtcaaaaagtgattgtacacatatcatttctcta 31227623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 25507310 - 25507255
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||  ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  25507310 agagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 25507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 43057121 - 43057062
Alignment:
Q  64 taagagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||||| |||||  ||||||||||||||||||| ||||  ||||||||||||||||    
T  43057121 taagagagaaagttgtcacaaaagttgttaaaaagtggttgttcaaatatcatttctcta 43057062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 7258578 - 7258640
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattttt 128  Q
    ||||||||  ||||| |||||||||| ||| |||||||||| |||| ||||||||||||||||    
T  7258578 agagagaaaattgttacaaaagttgtcaaagagtgattgtacaaatgtcatttctctattttt 7258640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 40874286 - 40874332
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||    
T  40874286 gttgtttcaaaagttgttaaaaaatggttgtacaaatatcatttctc 40874332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 22966841 - 22966785
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||  ||||||||||||||| | |||||||| ||||| |||||||||||||||    
T  22966841 agagagagggttgtttcaaaagttatcaaaaagtggttgtacaaatatcatttctct 22966785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 34913130 - 34913087
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctctattt 126  Q
    ||||||| ||||||| |||||||| |||||||||||||||||||    
T  34913130 aaaagttattaaaaaatgattgtacaaatatcatttctctattt 34913087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 19695714 - 19695752
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  19695714 aaagttgtcaaaaagtgattgtacaaatatcatttctct 19695752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 44977516 - 44977574
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaag-tgattgtataaatatcatttctcta 123  Q
    ||||||||  ||||| |||||||||| |||||| || ||||||||||||||||||||||    
T  44977516 agagagaaaattgttacaaaagttgtcaaaaagatggttgtataaatatcatttctcta 44977574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 15123962 - 15124007
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||||||||||| ||||| || ||||| ||||||||||||||    
T  15123962 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 15124007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 4036909 - 4036949
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||||||||||||  ||||| ||||||||||||||||    
T  4036909 aaaagttgttaaaaagtagttgtacaaatatcatttctcta 4036949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 5031978 - 5031922
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||||||| ||| || ||||| |||||||||||||||    
T  5031978 agagagaaagttgtcgcaaaagttgttacaaaatggttgtacaaatatcatttctct 5031922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 6336307 - 6336251
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||||||| ||| || ||||| |||||||||||||||    
T  6336307 agagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctct 6336251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 31415240 - 31415288
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    ||||||||||||||||| ||||||| |  ||| ||||||||||||||||    
T  31415240 gttgtttcaaaagttgtcaaaaagtaaacgtacaaatatcatttctcta 31415288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 39285890 - 39285854
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttct 120  Q
    |||||||| |||||||||||||| |||||||||||||    
T  39285890 aaagttgtcaaaaagtgattgtacaaatatcatttct 39285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 40106664 - 40106608
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||  ||||||||| ||||||| ||| |||| ||||| |||||||||||||||    
T  40106664 agagagatggttgtttcataagttgtcaaagagtggttgtacaaatatcatttctct 40106608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 33694226 - 33694273
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  33694226 gttgttttaaaagttgttaaaaagtgattgtacaaatatcatttctct 33694273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 42577527 - 42577471
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||  || |||||||||||||||||| ||||||||| |||||||||||||||    
T  42577527 agagagaaaattatttcaaaagttgttaaaatgtgattgtacaaatatcatttctct 42577471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 49931608 - 49931553
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||| |||||  |||||||||||||||| |||||||| ||||||||||||||    
T  49931608 agagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctc 49931553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 16583075 - 16583135
Alignment:
Q  64 taagagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    |||||||||| |||||  |||||||| || ||||||||||||  |||||||||||||||||    
T  16583075 taagagagaaagttgtcacaaaagttatttaaaagtgattgttcaaatatcatttctctat 16583135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 30536046 - 30535990
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  ||||| |||||||||| |||||||| |||||||||||||||    
T  30536046 agagagaaagttgtcacaaaaattgttaaaaaatgattgtacaaatatcatttctct 30535990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 12021960 - 12022007
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||||| ||||||| |||||| || ||||||||||||    
T  12021960 gttgtttcaaaagttgtcaaaaagtaattgtaaaagtatcatttctct 12022007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 25989017 - 25989060
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctctattt 126  Q
    ||||||||||||||| || ||||| |||||||||||||||||||    
T  25989017 aaaagttgttaaaaaatggttgtacaaatatcatttctctattt 25989060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 35883632 - 35883679
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||||| ||||| | |||||| |||||||||||||||    
T  35883632 gttgtttcaaaagttgtcaaaaaataattgtacaaatatcatttctct 35883679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 44672063 - 44672102
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  44672063 aaaagttgttaaaaaatgattgtacaaatatcatttctct 44672102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 14983821 - 14983783
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  14983821 aaagttgttaaaaagtggttgtacaaatatcatttctct 14983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 21433415 - 21433473
Alignment:
Q  64 taagagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||| |||||  |||||||||||| ||| || ||||| |||||||||||||||    
T  21433415 taagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctct 21433473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 30467543 - 30467605
Alignment:
Q  67 gagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattttta 129  Q
    ||||||| |||||  |||||||||| ||||| ||| |||  ||||||||||||||||||||||    
T  30467543 gagagaaagttgtcacaaaagttgtcaaaaaatgactgttcaaatatcatttctctattttta 30467605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 33675954 - 33675893
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattttt 128  Q
    |||||||| |||||| |||| ||||| |||||||| ||||| |||| ||||||||||||||||    
T  33675954 agagagaaagttgttacaaa-gttgtcaaaaagtggttgtacaaatgtcatttctctattttt 33675893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 3558884 - 3558847
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttct 120  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  3558884 aaaagttgtcaaaaattgattgtataaatatcatttct 3558847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 48872981 - 48873022
Alignment:
Q  81 tcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||| | |||||| |||||||||||||||||||||    
T  48872981 tcaaaagttgtcacaaagtggttgtataaatatcatttctct 48873022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 27742672 - 27742616
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||||| |||||||| ||||  |||||||||||||||    
T  27742672 agagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctct 27742616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 36750499 - 36750555
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||||||||||||||||| |||  || |  ||||| |||||||||||||||    
T  36750499 agagagaatgttgtttcaaaagttattaggaaatagttgtacaaatatcatttctct 36750555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 40434057 - 40434009
Alignment:
Q  70 agaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcattt 118  Q
    |||||||| ||||||||||| | |||||||| ||||| |||||||||||    
T  40434057 agaatgttatttcaaaagttatcaaaaagtggttgtacaaatatcattt 40434009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 48858878 - 48858822
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||||| |||||||| ||||  |||||||||||||||    
T  48858878 agagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctct 48858822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 51231338 - 51231374
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcattt 118  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  51231338 caaaagttgttaaaaagtggttgtacaaatatcattt 51231374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 43066620 - 43066666
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  43066620 ttgtttcaaaagttgttaaaaagtggttgtacaaatatcatttctct 43066666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 26629126 - 26629182
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||  ||||||||||||||||| |||||||| ||||| |||||||||||||||    
T  26629126 agagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 26629182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 30170745 - 30170801
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||  ||||||||||||||||| |||||||| ||||| |||||||||||||||    
T  30170745 agagagatggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 30170801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 3155888 - 3155842
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  3155888 ttgttccaaaagttgttaaaaagtggttgtacaaatatcatttctct 3155842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 2667734 - 2667783
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctctatttttatat 132  Q
    ||||||||||| ||| ||||||||||||||||||||||||  ||||||||    
T  2667734 aaaagttgttataaattgattgtataaatatcatttctcttcttttatat 2667783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 2730977 - 2731033
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||| |||||||||| |||||||| ||||  |||||||||||||||    
T  2730977 agagagaaagttgttacaaaagttgtcaaaaagtggttgttcaaatatcatttctct 2731033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 21526308 - 21526352
Alignment:
Q  77 tgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||    
T  21526308 tgttacaaaagttgttaaaaagtggttgtacaaatatcatttctc 21526352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 25830262 - 25830326
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctatttttat 130  Q
    |||||||| |||||  |||||||||||| ||| || ||||| |||||||||||||| ||||||||    
T  25830262 agagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctcaatttttat 25830326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 35792124 - 35792068
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||| ||||||| |||||||| |||||||||||||||    
T  35792124 agagagaaagttgtcacaaaagtttttaaaaaatgattgtacaaatatcatttctct 35792068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 8835886 - 8835941
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||  ||||||| ||||||||| |||||||||| ||| ||||||||||||||    
T  8835886 agagagagggttgttttaaaagttgtcaaaaagtgatcgtacaaatatcatttctc 8835941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 1068661 - 1068599
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattttt 128  Q
    |||||||| |||||  |||||||||| |||||||| ||||  ||||||||||||||| |||||    
T  1068661 agagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctcttttttt 1068599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 15116976 - 15117014
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatat 113  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  15116976 gttgtttcaaaagttgttaaaaagtggttgtacaaatat 15117014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 20996169 - 20996219
Alignment:
Q  72 aatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||| || ||||||||||| |||| |||||||| |||||||||||||||    
T  20996169 aatgttattccaaaagttgttcaaaaatgattgtacaaatatcatttctct 20996219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 29108032 - 29107994
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  29108032 aaagttgttaaaaaatgattgtacaaatatcatttctct 29107994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 35500987 - 35501025
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  35500987 aaagttgtcaaaaagtggttgtataaatatcatttctct 35501025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 122
Target Start/End: Original strand, 6511903 - 6511932
Alignment:
Q  93 aaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||||||||||||||||||    
T  6511903 aaaaagtgattgtataaatatcatttctct 6511932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 35634002 - 35634047
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctctattttt 128  Q
    ||||||||| | |||||| ||||| |||||||||||||||||||||    
T  35634002 aaaagttgtcagaaagtggttgtagaaatatcatttctctattttt 35634047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 36064069 - 36064024
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctctatttt 127  Q
    |||||||||| | ||| |||||||| ||||||||||||||||||||    
T  36064069 caaaagttgtcacaaaatgattgtacaaatatcatttctctatttt 36064024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 67177 - 67233
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||||||| ||| || ||||| |||||||||||||||    
T  67177 agagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctct 67233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 7376560 - 7376505
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||| |||||||||||| ||| || ||||| |||||||||||||||    
T  7376560 agagagaaagttgtt-caaaagttgttagaaattggttgtacaaatatcatttctct 7376505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 35067215 - 35067159
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  ||||||||||||| || || ||||| |||||||||||||||    
T  35067215 agagagaaagttgtcacaaaagttgttaagaaatggttgtacaaatatcatttctct 35067159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 40102061 - 40102021
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    ||||||||| |||||||| ||||| ||||||||||||||||    
T  40102061 aaaagttgtgaaaaagtggttgtacaaatatcatttctcta 40102021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 17367500 - 17367446
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttct 120  Q
    |||||||  ||||||||||||||||| |||||||| |||||||||||||||||||    
T  17367500 agagagatggttgtttcaaaagttgtcaaaaagtggttgtataaatatcatttct 17367446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 35206225 - 35206167
Alignment:
Q  64 taagagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||  ||||||||||||||| | |||||||||||||| ||| |||||||||||    
T  35206225 taagagagagagttgtttcaaaagttatcaaaaagtgattgtacaaacatcatttctct 35206167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 15638217 - 15638158
Alignment:
Q  64 taagagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    |||||||||| |||||  |||||||||| ||||| |||||||| |||||||||||||||||    
T  15638217 taagagagaaagttgtg-caaaagttgtcaaaaaatgattgtacaaatatcatttctctat 15638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 50831772 - 50831828
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||| ||| |||||| |||||||||| |||||||| ||||| |||||||||||||||    
T  50831772 agagggaaagttgttacaaaagttgtcaaaaagtggttgtacaaatatcatttctct 50831828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 3078924 - 3078979
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||| |||||  |||||||||||| ||| |||||||| ||||||||||||||    
T  3078924 agagagaaagttgtcacaaaagttgttacaaaatgattgtacaaatatcatttctc 3078979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 10762528 - 10762575
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||||||||| | |||||||  ||||||||||||||||||||||    
T  10762528 ttgtttcaaaagttatcaaaaagtagttgtataaatatcatttctcta 10762575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 17363268 - 17363225
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctctattt 126  Q
    ||||||||| | |||||||||||| |||||||||||||||||||    
T  17363268 aaaagttgtaataaagtgattgtacaaatatcatttctctattt 17363225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 19899356 - 19899313
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcattt 118  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||    
T  19899356 gttgcttcaaaagttgttaaaaagtggttgtacaaatatcattt 19899313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 40693639 - 40693694
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||| ||||| |||||| |||| ||||| | |||||||||||||||||||||    
T  40693639 agagagaaggttgtctcaaaaattgtcaaaaattaattgtataaatatcatttctc 40693694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 42915253 - 42915292
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  42915253 aaagttgtcaaaaagtgattgtacaaatatcatttctcta 42915292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 2004209 - 2004263
Alignment:
Q  70 agaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    |||| |||||| |||||||||||||||| || ||||  |||||||||||||||||    
T  2004209 agaaagttgttgcaaaagttgttaaaaaatggttgttcaaatatcatttctctat 2004263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 28480561 - 28480607
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctctatttttat 130  Q
    |||||||| | |||||| ||||||||||||||||||||| |||||||    
T  28480561 aaagttgtcataaagtggttgtataaatatcatttctctttttttat 28480607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 28481435 - 28481481
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctctatttttat 130  Q
    |||||||| | |||||| ||||||||||||||||||||| |||||||    
T  28481435 aaagttgtcataaagtggttgtataaatatcatttctctttttttat 28481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 28482310 - 28482356
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctctatttttat 130  Q
    |||||||| | |||||| ||||||||||||||||||||| |||||||    
T  28482310 aaagttgtcataaagtggttgtataaatatcatttctctttttttat 28482356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 54222083 - 54222129
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||| ||||||||||||||||||| ||||| |||||||||| ||||    
T  54222083 ttgttccaaaagttgttaaaaagtggttgtacaaatatcattcctct 54222129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 41010202 - 41010235
Alignment:
Q  94 aaaagtgattgtataaatatcatttctctatttt 127  Q
    |||| |||||||||||||||||||||||||||||    
T  41010202 aaaaatgattgtataaatatcatttctctatttt 41010235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 42490957 - 42490912
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctctattttta 129  Q
    |||||||| |||||||| ||||| ||||||||||||||| ||||||    
T  42490957 aaagttgtcaaaaagtggttgtacaaatatcatttctctgttttta 42490912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 46355310 - 46355366
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||||||||| | |||||||||  ||||||| ||||| ||||||||||||||||    
T  46355310 agagagaatgttgtat-aaaagttgtacaaaagtggttgtacaaatatcatttctcta 46355366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 56215646 - 56215605
Alignment:
Q  80 ttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||||||| |||||||| ||||| ||||||||||||||    
T  56215646 ttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 56215605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 515642 - 515694
Alignment:
Q  68 agagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttct 120  Q
    |||||||||||||  ||| ||||| ||||| | ||||||||||||||||||||    
T  515642 agagaatgttgttagaaaggttgtcaaaaaataattgtataaatatcatttct 515694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 8026785 - 8026825
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||| | ||| ||||||||||||||||||||||||    
T  8026785 caaaagttgtcacaaattgattgtataaatatcatttctct 8026825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 15522393 - 15522345
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctctatttttat 130  Q
    |||||||||||| ||| || ||||| | |||||||||||||||||||||    
T  15522393 caaaagttgttagaaaatggttgtacatatatcatttctctatttttat 15522345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 20760294 - 20760254
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||||||||| | |||||| |||||||||||||||    
T  20760294 caaaagttgttaaaaaataattgtacaaatatcatttctct 20760254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 20766685 - 20766645
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||||||||| | |||||| |||||||||||||||    
T  20766685 caaaagttgttaaaaaataattgtacaaatatcatttctct 20766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 25221755 - 25221795
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||||||||||||||| || || ||||||||||||    
T  25221755 caaaagttgttaaaaagtgattatacaactatcatttctct 25221795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 29963653 - 29963605
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    |||||||||||||||| |||||||   |||||||||||| |||||||||    
T  29963653 ttgtttcaaaagttgtcaaaaagtatatgtataaatatcgtttctctat 29963605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 47288137 - 47288069
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctatttttatattt 134  Q
    |||||||| |||||  ||||| |||||| ||| || ||||| ||||||||||||||| ||| |||||||    
T  47288137 agagagaaagttgtcacaaaaattgttacaaaatggttgtacaaatatcatttctctttttctatattt 47288069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 48099851 - 48099811
Alignment:
Q  81 tcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  48099851 tcaaaagttgtcacaaagtggttgtataaatatcatttctc 48099811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 48494935 - 48494975
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    ||||||||||||||||| ||||  |||||||||||||||||    
T  48494935 aaagttgttaaaaagtggttgttcaaatatcatttctctat 48494975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 51734649 - 51734705
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  ||||||||||| ||||||| ||||  |||||||||||||||    
T  51734649 agagagaaagttgtcacaaaagttgtttaaaagtggttgttcaaatatcatttctct 51734705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 53190965 - 53190929
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcattt 118  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  53190965 caaaagttgttaaaaagtggttgtacaaatatcattt 53190929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 11148566 - 11148510
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||||||||  |||||||||| ||||| |||||||| |||||||||||||||    
T  11148566 agagagaatgttgtcacaaaagttgtcaaaaattgattgtacaaatatcatttctct 11148510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 11306752 - 11306693
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattt 126  Q
    |||||||| |||||| |||| |||||||||||||||||||| |||||||||||||| ||||    
T  11306752 agagagaaagttgttacaaa-gttgttaaaaagtgattgtacaaatatcatttctcaattt 11306693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 2629873 - 2629818
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||| ||||||||||||||||| ||||| || ||||| ||||||||||||||    
T  2629873 agagagaaggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 2629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 8728597 - 8728652
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||  ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  8728597 agagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 8728652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 41621953 - 41621999
Alignment:
Q  75 gttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  41621953 gttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 41621999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 1293101 - 1293158
Alignment:
Q  65 aagagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    ||||||||| |||||  |||||||||||||||| || ||||| |||||||||||||||    
T  1293101 aagagagaaagttgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctct 1293158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 11881004 - 11881063
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctattt 126  Q
    |||||||| ||||| | ||||||||||||||| | |||||| |||||||||||||||||||    
T  11881004 agagagaaagttgtct-aaaagttgttaaaaaataattgtacaaatatcatttctctattt 11881063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 43057477 - 43057433
Alignment:
Q  79 tttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||||    
T  43057477 tttcaaaagttgtcaaaaagtggttgtacaaatatcatttctcta 43057433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 3109603 - 3109658
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    ||||||||||||||  |||||||||| | ||| |||||||| ||||||||||||||    
T  3109603 agagagaatgttgtcacaaaagttgtcacaaattgattgtacaaatatcatttctc 3109658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 4800518 - 4800573
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    |||||||  |||||| |||||||||| |||||||  ||||||||||||||||||||    
T  4800518 agagagagagttgttccaaaagttgtcaaaaagtagttgtataaatatcatttctc 4800573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 34270544 - 34270591
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||||||||||||||||| |  ||||| ||||||||||||||||    
T  34270544 ttgtttcaaaagttgttaaaaatttgttgtacaaatatcatttctcta 34270591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 41460170 - 41460116
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctc 121  Q
    ||||| || ||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  41460170 agagataaagttgttt-aaaagttgtcaaaaaatgattgtataaatatcatttctc 41460116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 18695373 - 18695316
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||| |||||  |||||||||||| ||| || ||||| ||||||||||||||||    
T  18695373 agagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctcta 18695316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 33191600 - 33191543
Alignment:
Q  67 gagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    ||||||| ||||| | |||| ||| || ||| ||||||||||||||||||||||||||    
T  33191600 gagagaaagttgtcttaaaaattgatagaaaatgattgtataaatatcatttctctat 33191543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 611919 - 611863
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||  |||||||||| ||||||| |||||  |||||||||||||||    
T  611919 agagagaaagttgtcacaaaagttgtcaaaaagtaattgttcaaatatcatttctct 611863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 844081 - 844033
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    |||||||||||||||| ||||| || ||||  |||||||||||||||||    
T  844081 ttgtttcaaaagttgtcaaaaaatggttgtgcaaatatcatttctctat 844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 18706247 - 18706207
Alignment:
Q  83 aaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||| |||||||| |||||||||||||||||||||| ||||    
T  18706247 aaaaattgttaaagagtgattgtataaatatcatttatcta 18706207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 27487926 - 27487886
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||||||||||| |||||||  |||||||||||||||    
T  27487926 caaaagttgttaaaaattgattgttcaaatatcatttctct 27487886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 30838381 - 30838437
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||  ||||||||||||||||| |||||||   |||| |||||||||||||||    
T  30838381 agagagatggttgtttcaaaagttgtcaaaaagtagatgtacaaatatcatttctct 30838437  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 35475861 - 35475813
Alignment:
Q  76 ttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctat 124  Q
    |||||| ||||||||||||||| ||||||||  ||||||| ||||||||    
T  35475861 ttgtttaaaaagttgttaaaaaatgattgtacgaatatcaattctctat 35475813  T

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Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 15222 - 15261
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  15222 aaagttgttaaaaagtgattgtacaaatatcatttctcta 15261  T

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Target: scaffold1625 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 797 - 853
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||  ||||||||||||||||| ||||| |||||||| |||||||||| ||||    
T  797 agagagatggttgtttcaaaagttgtcaaaaaatgattgtacaaatatcattcctct 853  T

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Target: scaffold0194 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 29795 - 29833
Alignment:
Q  84 aaagttgttaaaaagtgattgtataaatatcatttctct 122  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  29795 aaagttgtcaaaaagtggttgtataaatatcatttctct 29833  T

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Target: scaffold0432 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 6552 - 6593
Alignment:
Q  82 caaaagttgttaaaaagtgattgtataaatatcatttctcta 123  Q
    |||||||||||||||| |||||||  ||||||||||||||||    
T  6552 caaaagttgttaaaaaatgattgttcaaatatcatttctcta 6593  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 145115 - 145052
Alignment:
Q  66 agagagaatgttgtttcaaaagttgttaaaaagtgattgtataaatatcatttctctatttttat 130  Q
    ||||||||||||||  ||||||||||  |||| || ||||| |||||||||||||||||| ||||    
T  145115 agagagaatgttgta-caaaagttgtacaaaaatggttgtacaaatatcatttctctattattat 145052  T

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