View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_96 (Length: 247)
Name: NF6869A_low_96
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 5684044 - 5684134
Alignment:
| Q |
144 |
tctgtctaatgttatttttgaccaatcatccacttaatcaacctcactcacacgggcaatacagggataaagtactccactaaactatatt |
234 |
Q |
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| T |
5684044 |
tctgtctaatgatatttttgaccaatcatccacttaatcaacctcactcacacgggcaatacagggataaagtactccactaagctatatt |
5684134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 5709094 - 5709184
Alignment:
| Q |
144 |
tctgtctaatgttatttttgaccaatcatccacttaatcaacctcactcacacgggcaatacagggataaagtactccactaaactatatt |
234 |
Q |
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| T |
5709094 |
tctgtctaatgatatttttgaccaatcatccacttaatcaacctcactcacacgggcaatacagggataaagtactccactaagctatatt |
5709184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 5683918 - 5683984
Alignment:
| Q |
16 |
acatcaagataagtctcataccatatatagttatatactattacctttatgatcattccaacaaatt |
82 |
Q |
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| T |
5683918 |
acatcaagataagtctcataccatatatagttatatactattacctttatgatcattccaacaaatt |
5683984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 5708968 - 5709034
Alignment:
| Q |
16 |
acatcaagataagtctcataccatatatagttatatactattacctttatgatcattccaacaaatt |
82 |
Q |
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| T |
5708968 |
acatcaagataagtctcataccatatatagttatatactattacctttatgatcattccaacaaatt |
5709034 |
T |
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