View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_98 (Length: 246)
Name: NF6869A_low_98
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_98 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 47802383 - 47802624
Alignment:
| Q |
11 |
tggacatcaaatcaggatagaagtcactagaggctgtagtcccttttagagaagtcttccgctgcctttcggttagtttaggtcctggtcctgactcctg |
110 |
Q |
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| T |
47802383 |
tggacatcaaatcacggtagaagtcactagaggctgtagtcccttttagagaagtcttccgctgcctttcggttagtttaggtcctggtcctgactcctg |
47802482 |
T |
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| Q |
111 |
agtaagagccagtaagtaaggtgctagactggcccctt------ggtctgggtataactagagaatatttatctgcctttttggcactttttcggcttat |
204 |
Q |
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| T |
47802483 |
agtaagagccagtaagtaaggtgctagactggccccttggtctgggtctgggtataactagagaatatttatctgcctttttggcactttttcggcttat |
47802582 |
T |
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| Q |
205 |
ttttccttatcttttaggtaagtgaattgaccaggacatgaa |
246 |
Q |
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| T |
47802583 |
ttttccttatcttttaggtaagtgaattgaccaggacatgaa |
47802624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 47796730 - 47796943
Alignment:
| Q |
12 |
ggacatcaaatcaggatagaagtcactagaggctgtagtcccttttagagaag---tcttccgctgcctttc-ggttagtttaggtcctggtcctgactc |
107 |
Q |
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| T |
47796730 |
ggacattaaatcaggatggaagtcgctagaggatgtagtcccttttagggaagccttcttctgctgcctttttggttagtttaggtcctg---------- |
47796819 |
T |
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| Q |
108 |
ctgagtaagagccagtaagtaaggtgctagactggccccttggtctgggtataactagagaatatttatctgcctttttggcactttttcggcttatttt |
207 |
Q |
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| T |
47796820 |
---actaagagccagcaagtaaggtcctagcatggccccttggtctgggtataactagagaatatttatcggtctttttgggacttattcggctta-ttt |
47796915 |
T |
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| Q |
208 |
tccttatcttttaggtaagtgaattgac |
235 |
Q |
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| T |
47796916 |
tccttatcttttaggttagtgaagtgac |
47796943 |
T |
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