View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_high_12 (Length: 337)

Name: NF6870A_high_12
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_high_12
NF6870A_high_12
[»] chr5 (3 HSPs)
chr5 (20-153)||(9436959-9437092)
chr5 (226-320)||(9437167-9437261)
chr5 (256-320)||(33758579-33758643)
[»] chr7 (3 HSPs)
chr7 (20-141)||(15118245-15118366)
chr7 (256-320)||(15118069-15118133)
chr7 (264-320)||(10004338-10004394)
[»] chr2 (2 HSPs)
chr2 (20-118)||(5051932-5052030)
chr2 (270-310)||(7694668-7694708)
[»] chr4 (3 HSPs)
chr4 (227-320)||(50590359-50590452)
chr4 (257-320)||(51406907-51406970)
chr4 (65-128)||(50590200-50590263)
[»] chr3 (1 HSPs)
chr3 (259-320)||(51056070-51056131)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 9436959 - 9437092
Alignment:
Q  20 catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccca 119  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9436959 catcaccaccgagaaagggtgttgtgcaacccatatccaccaccaaaccaccgccaccttggaactacaccaaaggccgtcggcggtctacgaccaccca 9437058  T
Q  120 aaaccaaactcacacaaaggatttacagatctgc 153  Q
    ||||||||||||||||||||||||||| ||||||    
T  9437059 aaaccaaactcacacaaaggatttacatatctgc 9437092  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 9437167 - 9437261
Alignment:
Q  226 taaccacagttcaccgatgcagcaacctttgggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 320  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9437167 taaccacagtccaccgatgcagcaaccttcgggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 9437261  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 33758579 - 33758643
Alignment:
Q  256 gggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 320  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33758579 gggagatctggaaaggatggtgcggatggctaaagccgaccgtcgcaccaccaccaactgatgtc 33758643  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 15118366 - 15118245
Alignment:
Q  20 catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccca 119  Q
    |||||| ||||||||| |||||||  |||||||||||||||||| ||||||||||||||||||| |||||||||||| | | |||||||| |||||||||    
T  15118366 catcactaccgagaaatggtgttgcgcaacccatatccaccaccaaaccaccgccaccttggaattacaccaaaggctgccagcggtctacgaccaccca 15118267  T
Q  120 aaaccaaactcacacaaaggat 141  Q
    ||||||||| | |||| |||||    
T  15118266 aaaccaaacactcacagaggat 15118245  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 15118133 - 15118069
Alignment:
Q  256 gggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 320  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  15118133 gggagatctggaaagggtggtgcggatggctaaacccgaccgtcacaccaccaccaagtgatgtc 15118069  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 10004338 - 10004394
Alignment:
Q  264 tagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 320  Q
    |||||||||||||| |||||||||||||||  |||| |||||||| |||||| ||||    
T  10004338 tagaaagggtggtgtggatggctaaagccgttcgtcgcaccaccatcaactgttgtc 10004394  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 5051932 - 5052030
Alignment:
Q  20 catcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccc 118  Q
    ||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||| ||||||| || |||||||||||  ||||||||| ||||||||    
T  5051932 catcaccaccgagaaagggtgttgcgcaacccatatcaaccaccaaaccaccgccatcttggaattataccaaaggccgctggcggtctacgaccaccc 5052030  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 7694708 - 7694668
Alignment:
Q  270 gggtggtgcggatggctaaagccgaccgtcacaccaccacc 310  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  7694708 gggtggtgcggatggctaaagtcgaccgtcgcaccaccacc 7694668  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 50590359 - 50590452
Alignment:
Q  227 aaccacagttcaccgatgcagcaacctttgggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 320  Q
    ||||||||| |||||| ||  ||||||  ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  50590359 aaccacagtccaccgacgcgacaacctccgggagatctggaaagtgtggtgcggatggctaaagccgaccgtcgcaccaccaccacctgatgtc 50590452  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 51406970 - 51406907
Alignment:
Q  257 ggagatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 320  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  51406970 ggagatctggaaaggatggtgcggatggctaaagccgaccgtcgcaccaccaccatctgatgtc 51406907  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 50590200 - 50590263
Alignment:
Q  65 aaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccacccaaaaccaaac 128  Q
    |||| |||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  50590200 aaccgccgctaccttggaattacaccaaaggccgccggcggtctacgaccacccaaaaccaaac 50590263  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 51056131 - 51056070
Alignment:
Q  259 agatctagaaagggtggtgcggatggctaaagccgaccgtcacaccaccaccaactgatgtc 320  Q
    |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  51056131 agatctggaaagggtggtgtggatggctaaagccgaccgtcgcaccaccaccaactgatgtc 51056070  T

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