View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_high_14 (Length: 330)
Name: NF6870A_high_14
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 41966516 - 41966841
Alignment:
| Q |
5 |
aagaaacaaagatataatctgcctacaatgattattaaaaataatgttacttatctaagatgaggacacgagtgttatagtgaaactacgactttcaact |
104 |
Q |
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| T |
41966516 |
aagaaacaaagatataatctgcctacaatgattattaaaaataatgttatttatctaagatgaggacacgagtgttatagtgaaactacgactttcaact |
41966615 |
T |
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| Q |
105 |
ctttcaaaagacaaacccaaccattccaaatggaaaaatccaatccaagactatagtattacttttctctgtctacccacttgaggttattggaactctc |
204 |
Q |
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| T |
41966616 |
ctttcaaaagacaaacccaaccattccaaatggaaaaatccaatccaagactatagtattacttttctctgtctacccacttgaggttattggaactctc |
41966715 |
T |
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| Q |
205 |
ctcctcgttatgtgatattaatgactacccaaagcccagcattcccacactcttcaaatattttcttaagactaagtcttaatgcgtaaattgtttatta |
304 |
Q |
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| T |
41966716 |
ctcctcgttatgtgatattaatgactacccaaagcccagcattcccacactcttcaaatattttcttaagactaagtcttaatgcgtaaattgtttatta |
41966815 |
T |
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| Q |
305 |
cacaaccgacccatctcaaagatcat |
330 |
Q |
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| T |
41966816 |
cactaccgacccatctcaaagatcat |
41966841 |
T |
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