View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_high_6 (Length: 381)
Name: NF6870A_high_6
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_high_6 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 10010946 - 10010576
Alignment:
| Q |
8 |
ccaagaatattgaacattttgccatttcttcctctcaaaacaccttcacaatgagatcataacaaaattcaattaatgtctcaaattatgcaattcaata |
107 |
Q |
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| T |
10010946 |
ccaaaaatattgaacattttgccatttcttcctctcaaaacaccttcacaatgagatcataacaaaattcaattaatgtctcaaattatgcaattcaatc |
10010847 |
T |
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| Q |
108 |
acatcagaaaattttatttgatctaattaagaatacacatggccaacaaacnnnnnnnnnnnncaaccttattatgcatgaatgatgggaaaaaactaaa |
207 |
Q |
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| T |
10010846 |
acatcagaaaattttatttgatctaattaagaatacacatggccaacaaac--aaaaaaaaaacaaccttattatgcatgaatgaagggaaaaaactaaa |
10010749 |
T |
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| Q |
208 |
ccaatgtttggaaattttnnnnnnnnnnccatagtatatacaaaaccattcatcaatagatgcatgaccaatttcaattttattcatgaaatacgtttgt |
307 |
Q |
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| T |
10010748 |
ccaatgtttggaaa-ttaaaaaaaaaaaccatagtatatacaaaaccattcatcaatagatgcatgaccaatttcaattttattcatgaaatacgtttgt |
10010650 |
T |
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| Q |
308 |
agccaataaacaaaaacttagatcttcaacggtcggctttatgatatatccgattttacttttaaaccggatgg |
381 |
Q |
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| T |
10010649 |
agccaataaacaaaaacttagatcttcaacggtcggctttatggtatatccgattttacttttaaaccggatgg |
10010576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 9989253 - 9989192
Alignment:
| Q |
18 |
tgaacattttgccatttcttcctctcaaaacaccttcacaatgagatcataacaaaattcaa |
79 |
Q |
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| T |
9989253 |
tgaaccttttgccatttcttcctctcaaaacaacctcacaaagaaatcacaacaaaattcaa |
9989192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 9995298 - 9995212
Alignment:
| Q |
273 |
gaccaatttcaattttattcatgaaatacgtttgtagccaataaacaaaaacttagatcttcaacggtcggctttatgatatatccg |
359 |
Q |
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| T |
9995298 |
gacccatttcaattttagtcatgaagtttatttgcaaccaataaacaaaaaatttgatcctcaacggtcggctttattgtatatccg |
9995212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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