View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_102 (Length: 216)

Name: NF6870A_low_102
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_102
NF6870A_low_102
[»] scaffold0428 (3 HSPs)
scaffold0428 (77-191)||(2315-2429)
scaffold0428 (131-185)||(15224-15278)
scaffold0428 (130-190)||(13836-13896)
[»] chr6 (9 HSPs)
chr6 (77-191)||(33258194-33258308)
chr6 (77-189)||(33414568-33414679)
chr6 (77-186)||(33269541-33269649)
chr6 (98-191)||(33384049-33384142)
chr6 (101-190)||(31565028-31565117)
chr6 (100-184)||(33395074-33395160)
chr6 (117-190)||(33406911-33406984)
chr6 (131-185)||(33278975-33279029)
chr6 (130-190)||(33280357-33280417)
[»] chr2 (1 HSPs)
chr2 (98-186)||(17447873-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 2315 - 2429
Alignment:
Q  77 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  177 ttagaacaccaatgt 191  Q
    |||||||||||||||    
T  2415 ttagaacaccaatgt 2429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 15278 - 15224
Alignment:
Q  131 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacac 185  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  15278 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacac 15224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 13896 - 13836
Alignment:
Q  130 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatg 190  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| |||||||    
T  13896 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatg 13836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 33258194 - 33258308
Alignment:
Q  77 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  177 ttagaacaccaatgt 191  Q
    |||||||||||||||    
T  33258294 ttagaacaccaatgt 33258308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 33414568 - 33414679
Alignment:
Q  77 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 176  Q
    |||||||||||| ||  ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  33414568 gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaa 33414666  T
Q  177 ttagaacaccaat 189  Q
    |||||||||||||    
T  33414667 ttagaacaccaat 33414679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 33269541 - 33269649
Alignment:
Q  77 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 176  Q
    |||||||||||| ||  ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  33269541 gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaa 33269639  T
Q  177 ttagaacacc 186  Q
    ||||||||||    
T  33269640 ttagaacacc 33269649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 33384049 - 33384142
Alignment:
Q  98 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgt 191  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||    
T  33384049 acttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgt 33384142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 31565117 - 31565028
Alignment:
Q  101 tgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatg 190  Q
    |||||||||||||| | |||||||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| ||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatg 31565028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 33395074 - 33395160
Alignment:
Q  100 ttgcattgcaagatcgtcaaccaactccttaaatttctcacttctg--ccaacaaagtcggtttcaccgttcacttcaattagaaca 184  Q
    |||||||| ||||||  ||||||||||||| ||| | |||||||||  ||||||||||||||||||| |||||||||||| ||||||    
T  33395074 ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaaca 33395160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 33406911 - 33406984
Alignment:
Q  117 caaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatg 190  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||  ||||||| |||||| ||||| ||||    
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatg 33406984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 33278975 - 33279029
Alignment:
Q  131 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacac 185  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  33278975 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacac 33279029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 33280357 - 33280417
Alignment:
Q  130 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatg 190  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| |||||||    
T  33280357 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatg 33280417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 17447961 - 17447873
Alignment:
Q  98 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacacc 186  Q
    ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||  ||||| |||||||||| ||||    
T  17447961 acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccacc 17447873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University