View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_106 (Length: 210)

Name: NF6870A_low_106
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_106
NF6870A_low_106
[»] chr7 (7 HSPs)
chr7 (127-210)||(42680733-42680816)
chr7 (134-210)||(19786940-19787016)
chr7 (134-210)||(8733445-8733521)
chr7 (144-204)||(16535091-16535151)
chr7 (144-204)||(16630511-16630571)
chr7 (134-204)||(3932873-3932944)
chr7 (144-204)||(3052371-3052431)
[»] chr8 (2 HSPs)
chr8 (134-210)||(36379415-36379491)
chr8 (134-210)||(4877150-4877226)
[»] chr2 (2 HSPs)
chr2 (134-210)||(31487043-31487119)
chr2 (134-210)||(42277732-42277808)
[»] chr1 (3 HSPs)
chr1 (134-210)||(10909266-10909342)
chr1 (134-204)||(734535-734605)
chr1 (134-210)||(2409906-2409983)
[»] chr5 (3 HSPs)
chr5 (144-210)||(37208054-37208120)
chr5 (134-210)||(11852125-11852201)
chr5 (131-204)||(15469229-15469302)
[»] scaffold1361 (1 HSPs)
scaffold1361 (134-210)||(114-190)
[»] chr4 (4 HSPs)
chr4 (134-210)||(42470718-42470794)
chr4 (134-210)||(13774310-13774386)
chr4 (134-210)||(45162338-45162415)
chr4 (137-210)||(24908026-24908099)
[»] scaffold0050 (1 HSPs)
scaffold0050 (134-204)||(29488-29558)
[»] scaffold0008 (1 HSPs)
scaffold0008 (134-210)||(88505-88582)
[»] chr3 (2 HSPs)
chr3 (134-210)||(4530994-4531070)
chr3 (164-210)||(18966160-18966206)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 42680816 - 42680733
Alignment:
Q  127 aatattttctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||    
T  42680816 aatattctctacattttcttttgtccctgagccagatttggcatcagagctggttacgatacctcaaagttgagtttgtgcgaa 42680733  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 19786940 - 19787016
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786940 tctacctttccttttgtccctgagctagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 19787016  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 8733521 - 8733445
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| || |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  8733521 tctaccttctcttttgtccctgagccagatttggcatcagagctggttacaatacctcggagttgagtttgagcgaa 8733445  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 16535151 - 16535091
Alignment:
Q  144 cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttg 204  Q
    ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16535151 cttttgtccccgagccagatttggcatcagagctggttacgatacctcggagttgagtttg 16535091  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 16630511 - 16630571
Alignment:
Q  144 cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttg 204  Q
    ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16630511 cttttgtccccgagccagatttggcatcagagctggttacgatacctcggagttgagtttg 16630571  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 3932873 - 3932944
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagc-tggttacgatacctcggagttgagtttg 204  Q
    ||||| ||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  3932873 tctacctttccttttgtccctgagccagatttggcatcagagcttggttacgatacctcggagttgagtttg 3932944  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 3052371 - 3052431
Alignment:
Q  144 cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttg 204  Q
    ||||||| ||| ||||| ||||| |||||||||||||||||  || | |||||||||||||    
T  3052371 cttttgtccctcagccagatttgacatcagagctggttacgtaactttggagttgagtttg 3052431  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 36379491 - 36379415
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36379491 tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 36379415  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 4877150 - 4877226
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||    
T  4877150 tctacctttccttttgtccctgagccagatttggcatcagagctggttacgataccacggagttgagtttgagcgaa 4877226  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 31487043 - 31487119
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31487043 tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 31487119  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 42277808 - 42277732
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  42277808 tctacctttccttttgtccctgagccagatttgatatcagagctggttacgatacctcggagttgagtttgtgcgaa 42277732  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 10909266 - 10909342
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10909266 tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 10909342  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 734605 - 734535
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttg 204  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  734605 tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttg 734535  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 2409983 - 2409906
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagag-ctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||| || |||| ||||||||||||||||||| |||||||    
T  2409983 tctacctttccttttgtccctgagccagatttggcatcagagcctagttatgatacctcggagttgagttcgtgcgaa 2409906  T

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Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 37208054 - 37208120
Alignment:
Q  144 cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37208054 cttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 37208120  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 11852201 - 11852125
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  11852201 tctacctttccttttgtccctgagccagatttggcatcagagctggttatgatacctcggagttgagtttgagcgaa 11852125  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 15469229 - 15469302
Alignment:
Q  131 ttttctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttg 204  Q
    |||| ||| ||| ||||||| ||||||||| | ||||||||||||| ||||| |||||||| ||||||||||||    
T  15469229 ttttttacctttccttttgtccctgagccagaattggcatcagagcaggttatgatacctcagagttgagtttg 15469302  T

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Target: scaffold1361 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 114 - 190
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  114 tctacctttccttttgtccctgagccagatttggtatcagagctggttacgatacctcggagttgagtttgtgcgaa 190  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 42470794 - 42470718
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||    
T  42470794 tctacctttccttttgtccctgagccagatttggcatcagagctggttacgataccacggagttgagtttgagcgaa 42470718  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 13774310 - 13774386
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||| ||| |||||    
T  13774310 tctacctttccttttgtccctgagccagatttggtatcagagctggttacgatacctcgaagttgaggttgagcgaa 13774386  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 45162338 - 45162415
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagag-ctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||| || |||| ||||||||||||||||||| |||||||    
T  45162338 tctacctttccttttgtccctgagccagatttggcatcagagcctagttatgatacctcggagttgagttcgtgcgaa 45162415  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 24908099 - 24908026
Alignment:
Q  137 acattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    |||||| ||||||| | | ||||| |||||| || ||||| |||||||||||||| |||||||||||| |||||    
T  24908099 acatttccttttgtccttaagccaaatttggtattagagcaggttacgatacctcagagttgagtttgagcgaa 24908026  T

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Target: scaffold0050 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 29488 - 29558
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttg 204  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  29488 tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggcgttgagtttg 29558  T

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Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 88505 - 88582
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagc-tggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  88505 tctacctttccttttgtccctgagccagatttggtattagagcctggttacgatacctcggagttgagtttgtgcgaa 88582  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 4530994 - 4531070
Alignment:
Q  134 tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    ||||| ||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||| ||| |||||    
T  4530994 tctacctttccttttgtccctgagccagatttggtatcagagctggttacgatacctcgaagttgaggttgagcgaa 4531070  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 18966206 - 18966160
Alignment:
Q  164 ttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa 210  Q
    |||||| |||| ||||||||||||||||||||||||||||| |||||    
T  18966206 ttggcagcagaactggttacgatacctcggagttgagtttgagcgaa 18966160  T

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