View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_108 (Length: 209)

Name: NF6870A_low_108
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_108
NF6870A_low_108
[»] chr1 (3 HSPs)
chr1 (118-209)||(10909318-10909410)
chr1 (118-209)||(2409837-2409930)
chr1 (144-209)||(734487-734553)
[»] chr7 (11 HSPs)
chr7 (124-201)||(42680671-42680749)
chr7 (118-209)||(8733376-8733469)
chr7 (118-209)||(19786992-19787085)
chr7 (118-209)||(16535016-16535109)
chr7 (118-209)||(16630553-16630646)
chr7 (144-209)||(3932926-3932992)
chr7 (118-209)||(21768950-21769043)
chr7 (118-209)||(3933033-3933128)
chr7 (118-184)||(16534905-16534974)
chr7 (118-184)||(16630688-16630757)
chr7 (118-184)||(19787127-19787196)
[»] scaffold1361 (1 HSPs)
scaffold1361 (118-209)||(166-259)
[»] scaffold0008 (1 HSPs)
scaffold0008 (118-209)||(88558-88651)
[»] chr8 (4 HSPs)
chr8 (118-209)||(36379346-36379439)
chr8 (118-201)||(4877317-4877403)
chr8 (118-209)||(4877202-4877295)
chr8 (125-184)||(7939044-7939104)
[»] chr5 (3 HSPs)
chr5 (118-209)||(37208096-37208189)
chr5 (118-209)||(11852056-11852149)
chr5 (155-184)||(11851985-11852014)
[»] chr2 (2 HSPs)
chr2 (118-209)||(31487095-31487188)
chr2 (118-209)||(42277663-42277756)
[»] chr4 (6 HSPs)
chr4 (118-209)||(45162391-45162484)
chr4 (118-209)||(13774362-13774456)
chr4 (118-201)||(42470541-42470627)
chr4 (118-209)||(42470649-42470742)
chr4 (144-209)||(24907984-24908050)
chr4 (118-184)||(13774528-13774597)
[»] chr3 (3 HSPs)
chr3 (118-209)||(4531046-4531140)
chr3 (118-209)||(18966032-18966125)
chr3 (118-184)||(4531212-4531281)
[»] scaffold0050 (1 HSPs)
scaffold0050 (126-209)||(29540-29625)
[»] chr6 (1 HSPs)
chr6 (144-209)||(20642387-20642453)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 10909410 - 10909318
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10909410 atggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccgaggta 10909318  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 2409837 - 2409930
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  2409837 atggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggta 2409930  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 734487 - 734553
Alignment:
Q  144 gcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggta 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  734487 gcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggta 734553  T

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Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 42680671 - 42680749
Alignment:
Q  124 acaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaact 201  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42680671 acaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaact 42680749  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 8733376 - 8733469
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  8733376 atggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgattttttcgctcaaactcaactccgaggta 8733469  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 19787085 - 19786992
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19787085 atggccgcaaagtgaagtttcacaaaggcaactccttactcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 19786992  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 16535016 - 16535109
Alignment:
Q  118 atggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggta 209  Q
    |||||| |||||||||| ||||  || ||||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  16535016 atggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggta 16535109  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 16630646 - 16630553
Alignment:
Q  118 atggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggta 209  Q
    |||||| |||||||||| ||||  || ||||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  16630646 atggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggta 16630553  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 3932992 - 3932926
Alignment:
Q  144 gcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggta 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  3932992 gcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggta 3932926  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 21768950 - 21769043
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta 209  Q
    ||||| ||||||||||||||  | || |||||||||||||| ||||||||||||||||||||| |||| ||| | ||||||||||||| |||||    
T  21768950 atggctacaaagtgaagttttgagaaagcaactccttgctcgcttgaaaactcactttccgtttatttcttctctcaaactcaactccaaggta 21769043  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 3933128 - 3933033
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta 209  Q
    |||||| |||||||||||||  | || ||||||||||||||  ||||||||||||||| ||||||||||| ||||| ||||| |||||| ||||||    
T  3933128 atggccgcaaagtgaagttttgagaaagcaactccttgctctcacttgaaaactcactctccgttgatttcttcgctcaaacacaactctgaggta 3933033  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 16534905 - 16534974
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 184  Q
    |||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  16534905 atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 16534974  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 16630757 - 16630688
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 184  Q
    |||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  16630757 atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 16630688  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 19787196 - 19787127
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 184  Q
    |||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  19787196 atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 19787127  T

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Target: scaffold1361 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 259 - 166
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  259 atggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcacttttcgttgattttttcgcacaaactcaactccgaggta 166  T

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Target: scaffold0008 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 88651 - 88558
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  88651 atggccgcaaagtgaagttttacaaaggaaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 88558  T

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Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 36379346 - 36379439
Alignment:
Q  118 atggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggta 209  Q
    |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36379346 atggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 36379439  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 4877403 - 4877317
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaact 201  Q
    |||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||  ||||||| |||||||||||    
T  4877403 atggccgcaaagtgaagtttcacaaaggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact 4877317  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 4877295 - 4877202
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta 209  Q
    |||||| |||||||||||||  | || ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  4877295 atggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaactccgtggta 4877202  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 7939044 - 7939104
Alignment:
Q  125 caaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattt 184  Q
    |||||||| |||| |||| | ||||||||| |||||| |||||||||||||||||| ||||    
T  7939044 caaagtgatgtttcacaaggacaactccttactcactggaaaactcactttccgtttattt 7939104  T

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Target: chr5 (Bit Score: 70; Significance: 9e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 37208189 - 37208096
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37208189 atggccgcaaagtgaagttttacaaaggcaactccttgcgcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 37208096  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 11852056 - 11852149
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | |||||||| |||||||||||||||||||    
T  11852056 atggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgtaaactcactttccgtttattttttcgctcaaactcaactccgaggta 11852149  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 184
Target Start/End: Original strand, 11851985 - 11852014
Alignment:
Q  155 ctcacttgaaaactcactttccgttgattt 184  Q
    ||||||||||||||||||||||||||||||    
T  11851985 ctcacttgaaaactcactttccgttgattt 11852014  T

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Target: chr2 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 31487188 - 31487095
Alignment:
Q  118 atggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggta 209  Q
    |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31487188 atggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 31487095  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 42277663 - 42277756
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42277663 atggccgcaaagtgaagttttactaaggcaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 42277756  T

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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 45162484 - 45162391
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  45162484 atggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggta 45162391  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 13774456 - 13774362
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| |||||||    
T  13774456 atggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggta 13774362  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 42470541 - 42470627
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga--tttttcgcacaaactcaact 201  Q
    |||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||  |||||||| |||||||||||    
T  42470541 atggccgcaaagtgaagtttcacaaaggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact 42470627  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 42470649 - 42470742
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta 209  Q
    |||||| |||||||||||||  | || ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  42470649 atggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaactccgtggta 42470742  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 24907984 - 24908050
Alignment:
Q  144 gcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta 209  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||| ||||||    
T  24907984 gcaactccttgctcacttaaaaactcactttctgttgatttcttcgctcaaactcaactctgaggta 24908050  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 13774597 - 13774528
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 184  Q
    |||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  13774597 atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 13774528  T

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Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 4531140 - 4531046
Alignment:
Q  118 atggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| |||||||    
T  4531140 atggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggta 4531046  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 18966032 - 18966125
Alignment:
Q  118 atggccacaaagtgaagtttacaa-aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggta 209  Q
    |||||| ||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||    
T  18966032 atggccgcaaagtgaagttttccataggcaactccatgctcacttgaaaactcactttccgttgattttttcgctataactcaactccgaggta 18966125  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 4531281 - 4531212
Alignment:
Q  118 atggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 184  Q
    |||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  4531281 atggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 4531212  T

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Target: scaffold0050 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 29625 - 29540
Alignment:
Q  126 aaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggta 209  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| |||| || |||||||||| ||||||||    
T  29625 aaagtgaagttttacaaaggcaagtccttgctcacttgaaaacccactttccgttgatttttttgctcaaactcaacgccgaggta 29540  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 20642453 - 20642387
Alignment:
Q  144 gcaactccttgctcacttgaaaactcactttccgttgat-ttttcgcacaaactcaactccgaggta 209  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||  |||||| |||||||||||    
T  20642453 gcaactccttgctcacttgaaaactcactttccgttgattttttcgctaaaactcgactccgaggta 20642387  T

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