View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_11 (Length: 383)

Name: NF6870A_low_11
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_11
NF6870A_low_11
[»] chr4 (10 HSPs)
chr4 (178-333)||(37179999-37180154)
chr4 (178-333)||(37181583-37181738)
chr4 (178-333)||(37189700-37189855)
chr4 (182-333)||(37187682-37187833)
chr4 (19-115)||(37180220-37180316)
chr4 (19-115)||(37189538-37189634)
chr4 (182-230)||(38704220-38704268)
chr4 (43-115)||(37181445-37181517)
chr4 (27-114)||(37187901-37187988)
chr4 (43-115)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (200-316)||(27096701-27096814)
chr5 (200-316)||(27103004-27103117)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 178 - 333
Target Start/End: Complemental strand, 37180154 - 37179999
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180154 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37180055  T
Q  278 acaaatattccaacaattccatctctcaacattccaccactgccagcagtcacttc 333  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37180054 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37179999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 178 - 333
Target Start/End: Original strand, 37181583 - 37181738
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181583 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37181682  T
Q  278 acaaatattccaacaattccatctctcaacattccaccactgccagcagtcacttc 333  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37181683 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37181738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 178 - 333
Target Start/End: Original strand, 37189700 - 37189855
Alignment:
Q  178 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189700 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37189799  T
Q  278 acaaatattccaacaattccatctctcaacattccaccactgccagcagtcacttc 333  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37189800 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37189855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 182 - 333
Target Start/End: Complemental strand, 37187833 - 37187682
Alignment:
Q  182 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  37187833 ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa 37187734  T
Q  282 atattccaacaattccatctctcaacattccaccactgccagcagtcacttc 333  Q
    || |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  37187733 attttccaacaattccatctctcaacattccaccattgccagcagccacttc 37187682  T

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Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
Q  19 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37180316 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37180220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
Q  19 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37189538 catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37189634  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
Q  182 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704268 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 38704220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
Q  43 caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 115  Q
    ||||||||||||  ||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||||||    
T  37181445 caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg 37181517  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
Q  27 tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatctttt 114  Q
    |||||||||||  |  |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| ||||||||    
T  37187988 tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt 37187901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
Q  43 caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 115  Q
    ||||||||| ||||||||||    ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  38704369 caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg 38704293  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 27096701 - 27096814
Alignment:
Q  200 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 299  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||| ||   ||||||| ||||||    
T  27096701 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat 27096797  T
Q  300 ctctcaacattccacca 316  Q
    |||||||| ||||||||    
T  27096798 ctctcaactttccacca 27096814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 27103004 - 27103117
Alignment:
Q  200 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 299  Q
    |||||||| ||| |||||||||||||||| ||||||||  ||||||| |||||||||||||||||||| ||  |||| || ||   ||||||| ||||||    
T  27103004 cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaa---tccaacacttccat 27103100  T
Q  300 ctctcaacattccacca 316  Q
    |||||||| ||||||||    
T  27103101 ctctcaactttccacca 27103117  T

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