View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_113 (Length: 207)

Name: NF6870A_low_113
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_113
NF6870A_low_113
[»] chr2 (18 HSPs)
chr2 (22-191)||(44624829-44624998)
chr2 (42-191)||(44615456-44615605)
chr2 (55-183)||(39472763-39472891)
chr2 (55-191)||(39138693-39138826)
chr2 (56-186)||(39387494-39387624)
chr2 (42-191)||(39153106-39153255)
chr2 (34-191)||(39216704-39216861)
chr2 (58-191)||(39371164-39371297)
chr2 (56-191)||(39396652-39396787)
chr2 (88-185)||(39205774-39205871)
chr2 (82-185)||(44895133-44895236)
chr2 (56-186)||(39196510-39196640)
chr2 (58-191)||(39380496-39380629)
chr2 (58-186)||(39413031-39413159)
chr2 (75-182)||(39478313-39478420)
chr2 (56-186)||(39421186-39421313)
chr2 (106-159)||(39188804-39188857)
chr2 (88-185)||(39223764-39223861)
[»] chr8 (3 HSPs)
chr8 (55-191)||(44730162-44730298)
chr8 (69-191)||(44949908-44950030)
chr8 (34-191)||(45343012-45343169)
[»] chr5 (2 HSPs)
chr5 (34-186)||(17060698-17060850)
chr5 (56-186)||(33562341-33562471)
[»] scaffold0283 (1 HSPs)
scaffold0283 (69-191)||(5888-6010)
[»] chr7 (1 HSPs)
chr7 (55-191)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (128-185)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 44624998 - 44624829
Alignment:
Q  22 cttgtatccagtaacagatccaaaaagctttatgacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 121  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624998 cttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 44624899  T
Q  122 tccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624898 tccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 44624829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 44615605 - 44615456
Alignment:
Q  42 caaaaagctttatgacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 141  Q
    |||||| ||| | ||||||||||||| |||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  142 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctc 44615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 39472763 - 39472891
Alignment:
Q  55 gacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||| ||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  155 gctttcaactcacgcgctagcttcaatgc 183  Q
     ||||||| ||| | || |||||||||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgc 39472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 39138826 - 39138693
Alignment:
Q  55 gacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||| ||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    |||||||  | | | ||||||||||||||||| ||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctc 39138693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 39387494 - 39387624
Alignment:
Q  56 acttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||||||||  ||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  |||||||||||||||||||||||||||||||||    
T  39387494 acttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttag 39387593  T
Q  156 ctttcaactcacgcgctagcttcaatgcttc 186  Q
    |||| || |||||||||||||||||||||||    
T  39387594 cttttaaatcacgcgctagcttcaatgcttc 39387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 39153255 - 39153106
Alignment:
Q  42 caaaaagctttatgacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 141  Q
    |||||||||  | ||||||||||| | | ||| |||||  |||||||||||||||||||| || |||||| || |||||| |||||||||||||||||||    
T  39153255 caaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaattttcagtatt 39153156  T
Q  142 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    |||||| || ||||||||||| ||| | || || ||||||||||| ||||    
T  39153155 ttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctc 39153106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 39216861 - 39216704
Alignment:
Q  34 aacagatccaaaaagctttatgacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattt 133  Q
    ||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| |||||||||||    
T  39216861 aacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaattt 39216762  T
Q  134 tcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    | |||||||||  ||||||||| |||||| |||   ||||||||||||||||| ||||    
T  39216761 ttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctc 39216704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 39371297 - 39371164
Alignment:
Q  58 ttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 157  Q
    |||||||||| ||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  158 ttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    ||||  ||| | ||||||||||||||||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctc 39371164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 39396652 - 39396787
Alignment:
Q  56 acttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||||||||| | ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||||||||||||||||| | |||| ||    
T  39396652 acttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttctctaatgtaag 39396751  T
Q  156 ctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    || |||| ||| | |||||||||| |||||| ||||    
T  39396752 ctctcaaatcatgtgctagcttcagtgcttcttctc 39396787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 39205774 - 39205871
Alignment:
Q  88 ataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgctt 185  Q
    |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||||||||| |||   ||||||||||||||||    
T  39205774 ataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagcttcaatgctt 39205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 44895133 - 44895236
Alignment:
Q  82 caatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaat 181  Q
    |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| || | | | ||||||||||||    
T  44895133 caatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaatttatgtgctagcttcaat 44895232  T
Q  182 gctt 185  Q
    ||||    
T  44895233 gctt 44895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 39196510 - 39196640
Alignment:
Q  56 acttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||||||||| ||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||||||||||||| || ||||||||||    
T  39196510 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttag 39196609  T
Q  156 ctttcaactcacgcgctagcttcaatgcttc 186  Q
    ||||||| |||   |||||||||||||||||    
T  39196610 ctttcaaatcaaatgctagcttcaatgcttc 39196640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 39380496 - 39380629
Alignment:
Q  58 ttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 157  Q
    |||||||||| | ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  158 ttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    ||||| ||| | |||||| ||| |||||| ||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctc 39380629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 39413031 - 39413159
Alignment:
Q  58 ttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 157  Q
    |||||||||| | ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| ||||||| ||||| ||||||||||||| |||||||    
T  39413031 ttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtattttctttcaagttagct 39413130  T
Q  158 ttcaactcacgcgctagcttcaatgcttc 186  Q
    ||||| ||| | |||||||||||||||||    
T  39413131 ttcaaatcaagtgctagcttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 39478313 - 39478420
Alignment:
Q  75 aagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctag 174  Q
    ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||||||||| ||| | |||||    
T  39478313 aagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaagctttcaaatcatgtgctag 39478412  T
Q  175 cttcaatg 182  Q
    ||||||||    
T  39478413 cttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 39421186 - 39421313
Alignment:
Q  56 acttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    ||||||||||||   |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  ||||||||||||||||| ||| ||||    
T  39421186 acttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaattattttcagtattttcttccatattag 39421282  T
Q  156 ctttcaactcacgcgctagcttcaatgcttc 186  Q
    ||||||| ||| | || ||||||||||||||    
T  39421283 ctttcaaatcaagagcgagcttcaatgcttc 39421313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 39188804 - 39188857
Alignment:
Q  106 tagaaatccgagaacctccaaagaattttcagtattttctttcatgttagcttt 159  Q
    |||||| || |||||| ||||||||||| || ||||||||||||||||||||||    
T  39188804 tagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 39223861 - 39223764
Alignment:
Q  88 ataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgctt 185  Q
    |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||  |||| || |||   ||||||||||||||||    
T  39223861 ataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctt 39223764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 44730298 - 44730162
Alignment:
Q  55 gacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    |||||||||| || |||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    |||||||||||| | ||||||||||| ||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctc 44730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 44949908 - 44950030
Alignment:
Q  69 caaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacg 168  Q
    |||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||||||| |||||||||||| || |||  |||||||||| |    
T  44949908 caaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagtattttcttttattttaaatttcaactcatg 44950007  T
Q  169 cgctagcttcaatgcttcatctc 191  Q
     ||||||||||| ||||||||||    
T  44950008 tgctagcttcaaagcttcatctc 44950030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 45343169 - 45343012
Alignment:
Q  34 aacagatccaaaaagctttatgacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattt 133  Q
    ||||||| |||||||||  | ||||||||||| | ||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || |||    
T  45343169 aacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttt 45343070  T
Q  134 tcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    ||||||||| |||||| |||||||||||||||| | |||||||| |||||||| ||||    
T  45343069 tcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctc 45343012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 17060850 - 17060698
Alignment:
Q  34 aacagatccaaaaagctttatgacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattt 133  Q
    ||||||| ||||||| |  | ||||||||||| | |||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| |||| |    
T  17060850 aacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaatat 17060751  T
Q  134 tcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 186  Q
    ||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  17060750 tcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttc 17060698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 33562471 - 33562341
Alignment:
Q  56 acttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 155  Q
    |||||||||||| ||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||  |||||||||||||||||||||||    
T  33562471 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattcagtattttctttcatgttag 33562372  T
Q  156 ctttcaactcacgcgctagcttcaatgcttc 186  Q
    ||||||| |||   |||||||||||||||||    
T  33562371 ctttcaaatcaaatgctagcttcaatgcttc 33562341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 5888 - 6010
Alignment:
Q  69 caaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacg 168  Q
    |||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||||||| |||||||||||| || |||  |||||||||| |    
T  5888 caaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagtattttcttttattttaaatttcaactcatg 5987  T
Q  169 cgctagcttcaatgcttcatctc 191  Q
     ||||||||||| ||||||||||    
T  5988 tgctagcttcaaagcttcatctc 6010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 19809083 - 19808950
Alignment:
Q  55 gacttcatcttcagcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 154  Q
    ||||||||||||| ||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |   ||||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgtta 19808987  T
Q  155 gctttcaactcacgcgctagcttcaatgcttcatctc 191  Q
    |||||||| ||| | ||||||||||||| ||| ||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctc 19808950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 16114477 - 16114420
Alignment:
Q  128 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgctt 185  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctt 16114420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University