View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_114 (Length: 206)

Name: NF6870A_low_114
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_114
NF6870A_low_114
[»] chr6 (10 HSPs)
chr6 (35-188)||(31564964-31565117)
chr6 (12-188)||(33414568-33414744)
chr6 (12-119)||(33269541-33269648)
chr6 (12-188)||(33258194-33258372)
chr6 (23-139)||(33384040-33384156)
chr6 (12-188)||(33395052-33395230)
chr6 (62-158)||(33278972-33279068)
chr6 (65-188)||(33280358-33280481)
chr6 (25-69)||(33293034-33293078)
chr6 (128-188)||(33293090-33293150)
[»] chr2 (1 HSPs)
chr2 (12-188)||(17447805-17447981)
[»] scaffold0428 (3 HSPs)
scaffold0428 (12-188)||(2315-2493)
scaffold0428 (62-158)||(15185-15281)
scaffold0428 (65-188)||(13772-13895)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 31565117 - 31564964
Alignment:
Q  35 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 134  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  135 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcag 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcag 31564964  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 33414568 - 33414744
Alignment:
Q  12 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  33414568 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaat 33414667  T
Q  112 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcag 188  Q
    |||||||| |||  ||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||| ||||    
T  33414668 tagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcag 33414744  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 33269541 - 33269648
Alignment:
Q  12 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||    
T  33269541 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaat 33269640  T
Q  112 tagaacac 119  Q
    ||||||||    
T  33269641 tagaacac 33269648  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 33258194 - 33258372
Alignment:
Q  12 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 110  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  111 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcag 188  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcag 33258372  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  23 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 122  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  123 tgtgtgaatcgtgaatg 139  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 33395052 - 33395230
Alignment:
Q  12 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttca 109  Q
    |||||||||||||||||||   |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| |||||||||    
T  33395052 gaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttca 33395151  T
Q  110 attagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcag 188  Q
    || ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  || | || ||||||||||||||||    
T  33395152 atcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcag 33395230  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 33278972 - 33279068
Alignment:
Q  62 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 158  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 33279068  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 33280358 - 33280481
Alignment:
Q  65 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 164  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  165 ctcgtcttccggatttcttgtcag 188  Q
     |  ||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcag 33280481  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  25 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 69  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 33293090 - 33293150
Alignment:
Q  128 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcag 188  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| ||||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcag 33293150  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 17447981 - 17447805
Alignment:
Q  12 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 111  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| ||||||    
T  17447981 gaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaat 17447882  T
Q  112 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcag 188  Q
    |||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||    
T  17447881 tagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcag 17447805  T

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Target: scaffold0428 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 2315 - 2493
Alignment:
Q  12 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 110  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  111 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcag 188  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcag 2493  T

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Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 15281 - 15185
Alignment:
Q  62 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 158  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 15185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 13895 - 13772
Alignment:
Q  65 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 164  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  165 ctcgtcttccggatttcttgtcag 188  Q
     |  ||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcag 13772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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