View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_115 (Length: 203)

Name: NF6870A_low_115
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_115
NF6870A_low_115
[»] chr6 (1 HSPs)
chr6 (74-185)||(13230268-13230380)
[»] chr2 (4 HSPs)
chr2 (47-122)||(26796454-26796530)
chr2 (69-122)||(19181355-19181409)
chr2 (81-122)||(19179179-19179221)
chr2 (75-122)||(26717039-26717087)
[»] chr1 (4 HSPs)
chr1 (55-122)||(14784128-14784196)
chr1 (47-122)||(49087655-49087731)
chr1 (55-122)||(638242-638310)
chr1 (61-122)||(19487925-19487987)
[»] chr8 (4 HSPs)
chr8 (61-122)||(22795274-22795336)
chr8 (61-121)||(25434301-25434362)
chr8 (67-122)||(17707562-17707618)
chr8 (61-122)||(29454909-29454968)
[»] chr3 (3 HSPs)
chr3 (55-122)||(16224630-16224698)
chr3 (66-122)||(4609328-4609385)
chr3 (56-122)||(49492230-49492297)
[»] scaffold0186 (1 HSPs)
scaffold0186 (66-122)||(16897-16954)
[»] chr4 (1 HSPs)
chr4 (56-122)||(17258551-17258618)
[»] scaffold0070 (1 HSPs)
scaffold0070 (61-121)||(24827-24888)
[»] chr7 (3 HSPs)
chr7 (55-122)||(12731975-12732043)
chr7 (55-99)||(26172053-26172097)
chr7 (61-122)||(37947175-37947237)
[»] scaffold0107 (1 HSPs)
scaffold0107 (56-122)||(34120-34187)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 13230380 - 13230268
Alignment:
Q  74 gatgtccagcggctccttgatgtctttctcat-cttgattcagtaaaaaattgatatgatatttggacatatcgataatgttaaacattgatacagcttg 172  Q
    |||||||| ||||||||| || |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  13230380 gatgtccaacggctccttaatatctttctcattctttattcagtaaaaatttgatatgatatttggacatatcgataatgttaagcattgatatagcttg 13230281  T
Q  173 cacaaacccaata 185  Q
    |||||||||||||    
T  13230280 cacaaacccaata 13230268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 26796530 - 26796454
Alignment:
Q  47 agttccttggggtaccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||||| ||||||||||| ||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  26796530 agttccctggggtaccgacctagttgggatgtccaacggctccttgatgtcttcctcactcttgattcagtaaaaaa 26796454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 19181409 - 19181355
Alignment:
Q  69 gtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  19181409 gtcgggatgtccagcggctccttgatgtcttcatcactcttgattcagtaaaaaa 19181355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 19179179 - 19179221
Alignment:
Q  81 agcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  19179179 agcggcttcttgatgtctttctcactcttgattcagtaaaaaa 19179221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 26717087 - 26717039
Alignment:
Q  75 atgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    ||||||||| ||||||||||||||| |||| |||||||| |||||||||    
T  26717087 atgtccagcagctccttgatgtcttcctcactcttgatttagtaaaaaa 26717039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 14784128 - 14784196
Alignment:
Q  55 ggggtaccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    ||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  14784128 ggggttccgacctagtcgggatgtccagcggctccttgatgtcttcctcactcttgattcagtaaaaaa 14784196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 49087655 - 49087731
Alignment:
Q  47 agttccttggggtaccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||||| |||||| || | ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  49087655 agttccctggggtcccaacctagtcgggatgtccagcggctctttgatgtcttcctcactcttgattcagtaaaaaa 49087731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 638242 - 638310
Alignment:
Q  55 ggggtaccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||||||||| ||| | |||||||||||||||||||||||||||| |||| |||||||||| |||||||    
T  638242 ggggtaccgacctaattgggatgtccagcggctccttgatgtcttcctcactcttgattcaataaaaaa 638310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 19487987 - 19487925
Alignment:
Q  61 ccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||| ||| ||||||||||||||| |||||||||||||| |||| |||| ||| |||||||||    
T  19487987 ccgacctaatcgggatgtccagcgactccttgatgtcttcctcactctttattaagtaaaaaa 19487925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 22795274 - 22795336
Alignment:
Q  61 ccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||    
T  22795274 ccgacctagtcgggatgtccagcggctccttgatgtcatcctcactcttgattcagtaaaaaa 22795336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 25434362 - 25434301
Alignment:
Q  61 ccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaa 121  Q
    ||||| ||||||||||||||| ||| || |||||||||| |||| |||||||||||||||||    
T  25434362 ccgatttagtcgggatgtccaacggttctttgatgtcttcctcactcttgattcagtaaaaa 25434301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 17707562 - 17707618
Alignment:
Q  67 tagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||| |||||||| |||| |||||||||||||| |||| ||||||||||||||||||    
T  17707562 tagttgggatgtctagcgactccttgatgtcttgctcactcttgattcagtaaaaaa 17707618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 29454968 - 29454909
Alignment:
Q  61 ccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||| ||| ||||||||||||||||||||||||| ||   |||| ||||||||||||||||||    
T  29454968 ccgacctaatcgggatgtccagcggctccttgatatc---ctcactcttgattcagtaaaaaa 29454909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 16224698 - 16224630
Alignment:
Q  55 ggggtaccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||    
T  16224698 ggggtgccgacctagtcgagatgtccagcggctccttgatgtcttcctgactcttgattcagtaaaaaa 16224630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 4609385 - 4609328
Alignment:
Q  66 ctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||||||| ||||||||||| ||||||||||||| |||| |||||||||| |||||||    
T  4609385 ctagtcggcatgtccagcggttccttgatgtcttcctcactcttgattcaataaaaaa 4609328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 49492297 - 49492230
Alignment:
Q  56 gggtaccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||| |||| |||||||||||||||| |||||||||||| || | |||| ||||| ||||||||||||    
T  49492297 gggtgccgacctagtcgggatgtccatcggctccttgatttcatcctcactcttggttcagtaaaaaa 49492230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 16897 - 16954
Alignment:
Q  66 ctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    ||||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||    
T  16897 ctagttgggatgtccagcggctccttgatgtcttcctcactcttaattcagtaaaaaa 16954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 17258551 - 17258618
Alignment:
Q  56 gggtaccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||| |||| ||| |||||||||||| || |||||||||||||| |||| ||||||||||||||||||    
T  17258551 gggtgccgacctattcgggatgtccaacgactccttgatgtcttcctcactcttgattcagtaaaaaa 17258618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 24827 - 24888
Alignment:
Q  61 ccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaa 121  Q
    |||| ||||||||||||| || |||||||||||||| |||| || |||||||||||||||||    
T  24827 ccgacctagtcgggatgttcaacggctccttgatgtgtttcccactcttgattcagtaaaaa 24888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 12732043 - 12731975
Alignment:
Q  55 ggggtaccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    ||||| |||| |||||||||||||||||| | || ||||||| || |||| ||||||||||||||||||    
T  12732043 ggggtgccgacctagtcgggatgtccagcagttcattgatgttttcctcactcttgattcagtaaaaaa 12731975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 26172053 - 26172097
Alignment:
Q  55 ggggtaccgatctagtcgggatgtccagcggctccttgatgtctt 99  Q
    ||||| |||| |||||||||||||||||||||||||| |||||||    
T  26172053 ggggtgccgacctagtcgggatgtccagcggctccttaatgtctt 26172097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 37947237 - 37947175
Alignment:
Q  61 ccgatctagtcgggatgtccagcggctccttgatgtctttctca-tcttgattcagtaaaaaa 122  Q
    |||| |||||||| |||| || ||||||||||||||||| |||| |||||||||| |||||||    
T  37947237 ccgacctagtcggaatgttcaacggctccttgatgtcttcctcactcttgattcactaaaaaa 37947175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 34187 - 34120
Alignment:
Q  56 gggtaccgatctagtcgggatgtccagcggctccttgatgtctttctc-atcttgattcagtaaaaaa 122  Q
    |||| |||| |||||||||||||||| ||| || ||||||| || ||| |||||||||||||||||||    
T  34187 gggtgccgacctagtcgggatgtccaacggttcattgatgttttcctcaatcttgattcagtaaaaaa 34120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University