View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_116 (Length: 202)

Name: NF6870A_low_116
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_116
NF6870A_low_116
[»] chr2 (15 HSPs)
chr2 (61-129)||(1023623-1023691)
chr2 (60-124)||(1010590-1010654)
chr2 (138-180)||(20372338-20372380)
chr2 (64-124)||(1047002-1047062)
chr2 (140-173)||(14582925-14582958)
chr2 (140-173)||(15944589-15944622)
chr2 (140-173)||(15953104-15953137)
chr2 (140-173)||(17687430-17687463)
chr2 (140-173)||(20621518-20621551)
chr2 (140-173)||(25483601-25483634)
chr2 (140-173)||(25491207-25491240)
chr2 (140-173)||(35138593-35138626)
chr2 (140-173)||(35146929-35146962)
chr2 (140-173)||(41233876-41233909)
chr2 (140-173)||(42249487-42249520)
[»] chr4 (9 HSPs)
chr4 (61-124)||(40642231-40642294)
chr4 (140-177)||(21532332-21532369)
chr4 (140-173)||(8094314-8094347)
chr4 (140-173)||(8103120-8103153)
chr4 (140-173)||(10638328-10638361)
chr4 (140-173)||(12428510-12428543)
chr4 (140-173)||(12996476-12996509)
chr4 (140-173)||(27343723-27343756)
chr4 (140-173)||(52295604-52295637)
[»] chr8 (8 HSPs)
chr8 (140-180)||(17664665-17664705)
chr8 (140-180)||(17683821-17683861)
chr8 (140-173)||(4582204-4582237)
chr8 (138-183)||(4839804-4839849)
chr8 (140-173)||(17973565-17973598)
chr8 (140-173)||(26873636-26873669)
chr8 (140-173)||(26876086-26876119)
chr8 (140-173)||(30938282-30938315)
[»] chr3 (9 HSPs)
chr3 (139-177)||(28470245-28470283)
chr3 (139-173)||(50824351-50824385)
chr3 (139-173)||(50851475-50851509)
chr3 (140-173)||(30508-30541)
chr3 (140-173)||(8197728-8197761)
chr3 (140-173)||(14538637-14538670)
chr3 (140-173)||(17628265-17628298)
chr3 (140-173)||(17919199-17919232)
chr3 (140-173)||(27341367-27341400)
[»] chr7 (6 HSPs)
chr7 (140-173)||(30244775-30244808)
chr7 (140-180)||(10439937-10439977)
chr7 (140-173)||(4941609-4941642)
chr7 (140-173)||(4952429-4952462)
chr7 (140-173)||(12978455-12978488)
chr7 (140-173)||(18304424-18304457)
[»] chr5 (7 HSPs)
chr5 (140-177)||(29186306-29186343)
chr5 (86-129)||(35821317-35821360)
chr5 (139-173)||(20398667-20398701)
chr5 (140-173)||(19223555-19223588)
chr5 (140-173)||(20372945-20372978)
chr5 (140-173)||(24956878-24956911)
chr5 (140-173)||(24965341-24965374)
[»] chr6 (10 HSPs)
chr6 (140-180)||(15391636-15391676)
chr6 (139-173)||(5004060-5004094)
chr6 (139-173)||(5489151-5489185)
chr6 (139-173)||(25550294-25550328)
chr6 (139-173)||(35091708-35091742)
chr6 (140-173)||(5994699-5994732)
chr6 (140-173)||(13490193-13490226)
chr6 (140-173)||(23925335-23925368)
chr6 (140-173)||(30824561-30824594)
chr6 (140-177)||(33298085-33298122)
[»] scaffold0048 (1 HSPs)
scaffold0048 (139-173)||(7661-7695)
[»] scaffold0991 (1 HSPs)
scaffold0991 (140-173)||(405-438)
[»] scaffold0497 (1 HSPs)
scaffold0497 (140-173)||(10993-11026)
[»] scaffold0431 (1 HSPs)
scaffold0431 (140-173)||(139-172)
[»] scaffold0156 (1 HSPs)
scaffold0156 (140-173)||(35388-35421)
[»] scaffold0111 (1 HSPs)
scaffold0111 (140-173)||(33035-33068)
[»] scaffold0083 (1 HSPs)
scaffold0083 (140-173)||(15813-15846)
[»] scaffold0039 (1 HSPs)
scaffold0039 (140-173)||(40865-40898)
[»] scaffold0016 (1 HSPs)
scaffold0016 (140-173)||(23464-23497)
[»] scaffold0015 (1 HSPs)
scaffold0015 (140-173)||(192528-192561)
[»] scaffold0002 (1 HSPs)
scaffold0002 (140-173)||(121228-121261)
[»] chr1 (4 HSPs)
chr1 (140-173)||(21498930-21498963)
chr1 (140-173)||(31539954-31539987)
chr1 (140-173)||(31548523-31548556)
chr1 (140-173)||(35104096-35104129)


Alignment Details
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 1023691 - 1023623
Alignment:
Q  61 agtccaactagaggagacattgctttagaatttgctccaatttgcactttacaatcatctatcaaagat 129  Q
    ||||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  1023691 agtccaactagagaaagcattgctttagaacttgctccaatttgcactttacaatcatttatcatagat 1023623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 1010654 - 1010590
Alignment:
Q  60 cagtccaactagaggagacattgctttagaatttgctccaatttgcactttacaatcatctatca 124  Q
    |||||||||||||| |  ||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  1010654 cagtccaactagagcaagcatggctttagaacttgctcaaatttgcactttacaatcatctatca 1010590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 20372380 - 20372338
Alignment:
Q  138 tatgtcatacctcaaattttgaccacttttctctatccttgcc 180  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  20372380 tatgtcataccccaaattttgaccacttttctctatccttgcc 20372338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 1047002 - 1047062
Alignment:
Q  64 ccaactagaggagacattgctttagaatttgctccaatttgcactttacaatcatctatca 124  Q
    |||||||||| ||||| ||| |||||| || |||||||||||||||| |||||| ||||||    
T  1047002 ccaactagagcagacaatgccttagaacttactccaatttgcactttgcaatcacctatca 1047062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 14582925 - 14582958
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  14582925 tgtcataccccaaattttgaccacttttctctat 14582958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 15944622 - 15944589
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  15944622 tgtcataccccaaattttgaccacttttctctat 15944589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 15953137 - 15953104
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  15953137 tgtcataccccaaattttgaccacttttctctat 15953104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 17687463 - 17687430
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctat 17687430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 20621518 - 20621551
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  20621518 tgtcataccccaaattttgaccacttttctctat 20621551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 25483601 - 25483634
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  25483601 tgtcataccccaaattttgaccacttttctctat 25483634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 25491207 - 25491240
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  25491207 tgtcataccccaaattttgaccacttttctctat 25491240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 35138593 - 35138626
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  35138593 tgtcataccccaaattttgaccacttttctctat 35138626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 35146929 - 35146962
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  35146929 tgtcataccccaaattttgaccacttttctctat 35146962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 41233909 - 41233876
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  41233909 tgtcataccccaaattttgaccacttttctctat 41233876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 42249520 - 42249487
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  42249520 tgtcataccccaaattttgaccacttttctctat 42249487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 40642231 - 40642294
Alignment:
Q  61 agtccaactagaggagacattgctttagaatttgctccaatttgcactttacaatcatctatca 124  Q
    ||||||||||||| |  ||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  40642231 agtccaactagagcaagcattgctttagaacttgctccaatttacactttacaataatctatca 40642294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 21532369 - 21532332
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctatcctt 177  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  21532369 tgtcataccccaaattttgaccacttttctctatcctt 21532332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 8094347 - 8094314
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  8094347 tgtcataccccaaattttgaccacttttctctat 8094314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 8103153 - 8103120
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  8103153 tgtcataccccaaattttgaccacttttctctat 8103120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 10638328 - 10638361
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctat 10638361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 12428543 - 12428510
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  12428543 tgtcataccccaaattttgaccacttttctctat 12428510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 12996476 - 12996509
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  12996476 tgtcataccccaaattttgaccacttttctctat 12996509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 27343756 - 27343723
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  27343756 tgtcataccccaaattttgaccacttttctctat 27343723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 52295604 - 52295637
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  52295604 tgtcataccccaaattttgaccacttttctctat 52295637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 17664705 - 17664665
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctatccttgcc 180  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  17664705 tgtcataccccaaattttgaccacttttctctatccttgcc 17664665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 17683861 - 17683821
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctatccttgcc 180  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcc 17683821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 4582204 - 4582237
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| |||||||||||||||||||||||    
T  4582204 tgtcataccttaaattttgaccacttttctctat 4582237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 4839849 - 4839804
Alignment:
Q  138 tatgtcatacctcaaattttgaccacttttctctatccttgcctat 183  Q
    ||||||||||| |||||||||||| ||||||||||| ||| |||||    
T  4839849 tatgtcataccccaaattttgaccgcttttctctattcttacctat 4839804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 17973565 - 17973598
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  17973565 tgtcataccccaaattttgaccacttttctctat 17973598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 26873669 - 26873636
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  26873669 tgtcataccccaaattttgaccacttttctctat 26873636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 26876119 - 26876086
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  26876119 tgtcataccccaaattttgaccacttttctctat 26876086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 30938282 - 30938315
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  30938282 tgtcataccccaaattttgaccacttttctctat 30938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 28470283 - 28470245
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctatcctt 177  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  28470283 atgtcataccccaaattttgaccacttttctctatcctt 28470245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 50824351 - 50824385
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  50824351 atgtcataccccaaattttgaccacttttctctat 50824385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 50851509 - 50851475
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  50851509 atgtcataccccaaattttgaccacttttctctat 50851475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 30541 - 30508
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctat 30508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 8197761 - 8197728
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctat 8197728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 14538670 - 14538637
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  14538670 tgtcataccccaaattttgaccacttttctctat 14538637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 17628265 - 17628298
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctat 17628298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 17919199 - 17919232
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  17919199 tgtcataccccaaattttgaccacttttctctat 17919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 27341400 - 27341367
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  27341400 tgtcataccccaaattttgaccacttttctctat 27341367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 30244775 - 30244808
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||||||||||||||||||||||||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctat 30244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 10439937 - 10439977
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctatccttgcc 180  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  10439937 tgtcataccccaaattttgaccacttttctctattcttgcc 10439977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 4941642 - 4941609
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctat 4941609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 4952462 - 4952429
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||||||||||||||||||||| |||||    
T  4952462 tgtcatacctcaaattttgaccacttttatctat 4952429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 12978455 - 12978488
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  12978455 tgtcataccccaaattttgaccacttttctctat 12978488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 18304457 - 18304424
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  18304457 tgtcataccccaaattttgaccacttttctctat 18304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 29186343 - 29186306
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctatcctt 177  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  29186343 tgtcataccccaaattttgaccacttttctctatcctt 29186306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 35821360 - 35821317
Alignment:
Q  86 tagaatttgctccaatttgcactttacaatcatctatcaaagat 129  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||    
T  35821360 tagaacttgctccaatttgcactttacaatcatcaatcatagat 35821317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 20398701 - 20398667
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  20398701 atgtcataccccaaattttgaccacttttctctat 20398667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 19223555 - 19223588
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  19223555 tgtcataccccaaattttgaccacttttctctat 19223588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 20372978 - 20372945
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  20372978 tgtcataccccaaattttgaccacttttctctat 20372945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 24956911 - 24956878
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  24956911 tgtcataccccaaattttgaccacttttctctat 24956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 24965374 - 24965341
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  24965374 tgtcataccccaaattttgaccacttttctctat 24965341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 15391676 - 15391636
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctatccttgcc 180  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  15391676 tgtcatatcccaaattttgaccacttttctctatccttgcc 15391636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 5004060 - 5004094
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  5004060 atgtcataccccaaattttgaccacttttctctat 5004094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 5489185 - 5489151
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  5489185 atgtcataccccaaattttgaccacttttctctat 5489151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 25550294 - 25550328
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  25550294 atgtcataccccaaattttgaccacttttctctat 25550328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 35091742 - 35091708
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  35091742 atgtcataccccaaattttgaccacttttctctat 35091708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 5994699 - 5994732
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  5994699 tgtcataccccaaattttgaccacttttctctat 5994732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 13490193 - 13490226
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  13490193 tgtcataccccaaattttgaccacttttctctat 13490226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 23925335 - 23925368
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  23925335 tgtcataccccaaattttgaccacttttctctat 23925368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 30824594 - 30824561
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  30824594 tgtcataccccaaattttgaccacttttctctat 30824561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 33298085 - 33298122
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctatcctt 177  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  33298085 tgtcataccccaacttttgaccacttttctctatcctt 33298122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 7695 - 7661
Alignment:
Q  139 atgtcatacctcaaattttgaccacttttctctat 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  7695 atgtcataccccaaattttgaccacttttctctat 7661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 438 - 405
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctat 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 10993 - 11026
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  10993 tgtcataccccaaattttgaccacttttctctat 11026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 139 - 172
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  139 tgtcataccccaaattttgaccacttttctctat 172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 35421 - 35388
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  35421 tgtcataccccaaattttgaccacttttctctat 35388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 33035 - 33068
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  33035 tgtcataccccaaattttgaccacttttctctat 33068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 15813 - 15846
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  15813 tgtcataccccaaattttgaccacttttctctat 15846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 40898 - 40865
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  40898 tgtcataccccaaattttgaccacttttctctat 40865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 23464 - 23497
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  23464 tgtcataccccaaattttgaccacttttctctat 23497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 192528 - 192561
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  192528 tgtcataccccaaattttgaccacttttctctat 192561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 121228 - 121261
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  121228 tgtcataccccaaattttgaccacttttctctat 121261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 21498963 - 21498930
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctat 21498930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 31539954 - 31539987
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  31539954 tgtcataccccaaattttgaccacttttctctat 31539987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 31548523 - 31548556
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  31548523 tgtcataccccaaattttgaccacttttctctat 31548556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 35104129 - 35104096
Alignment:
Q  140 tgtcatacctcaaattttgaccacttttctctat 173  Q
    ||||||||| ||||||||||||||||||||||||    
T  35104129 tgtcataccccaaattttgaccacttttctctat 35104096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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