View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6870A_low_16 (Length: 368)

Name: NF6870A_low_16
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6870A_low_16
NF6870A_low_16
[»] chr7 (30 HSPs)
chr7 (169-368)||(45038138-45038330)
chr7 (38-162)||(11016857-11016981)
chr7 (40-168)||(34854715-34854843)
chr7 (40-168)||(41018248-41018376)
chr7 (40-162)||(38975795-38975917)
chr7 (42-162)||(4290537-4290657)
chr7 (40-162)||(15027532-15027654)
chr7 (49-168)||(27028813-27028932)
chr7 (82-162)||(48000769-48000849)
chr7 (82-165)||(7671934-7672017)
chr7 (37-168)||(29053334-29053456)
chr7 (42-168)||(45231874-45231996)
chr7 (88-162)||(42628333-42628407)
chr7 (69-135)||(22764753-22764819)
chr7 (82-168)||(4649352-4649440)
chr7 (39-106)||(48000683-48000750)
chr7 (53-138)||(30217504-30217588)
chr7 (113-162)||(48000720-48000769)
chr7 (82-168)||(10419490-10419576)
chr7 (52-98)||(41945945-41945991)
chr7 (52-98)||(42628385-42628431)
chr7 (52-109)||(11016948-11017005)
chr7 (131-168)||(42628315-42628352)
chr7 (54-150)||(41945859-41945955)
chr7 (56-107)||(48000818-48000869)
chr7 (10-40)||(45038327-45038357)
chr7 (52-105)||(4290628-4290681)
chr7 (52-117)||(27028730-27028795)
chr7 (132-168)||(29053396-29053432)
chr7 (50-106)||(38975887-38975943)
[»] chr1 (49 HSPs)
chr1 (39-162)||(5995358-5995481)
chr1 (40-162)||(29179623-29179745)
chr1 (40-162)||(48993943-48994065)
chr1 (40-168)||(37155036-37155164)
chr1 (40-162)||(48498405-48498527)
chr1 (82-168)||(34062241-34062327)
chr1 (53-168)||(9157313-9157428)
chr1 (52-165)||(44706806-44706920)
chr1 (52-162)||(32540774-32540884)
chr1 (82-162)||(29371400-29371480)
chr1 (61-168)||(4609007-4609114)
chr1 (52-150)||(1091582-1091680)
chr1 (52-161)||(17127591-17127700)
chr1 (82-162)||(741528-741608)
chr1 (88-162)||(8337877-8337951)
chr1 (88-168)||(46333966-46334046)
chr1 (50-168)||(19711200-19711316)
chr1 (111-177)||(1819500-1819566)
chr1 (57-159)||(45728294-45728396)
chr1 (88-168)||(47303433-47303513)
chr1 (52-139)||(36290456-36290543)
chr1 (39-114)||(46931986-46932061)
chr1 (80-168)||(38674525-38674611)
chr1 (82-162)||(15220843-15220923)
chr1 (100-168)||(28928799-28928867)
chr1 (82-162)||(33219605-33219685)
chr1 (82-162)||(49444939-49445017)
chr1 (82-168)||(5694910-5694995)
chr1 (52-106)||(5995451-5995505)
chr1 (53-126)||(21630045-21630118)
chr1 (52-106)||(15220893-15220947)
chr1 (126-168)||(46334022-46334064)
chr1 (82-168)||(48604967-48605053)
chr1 (131-168)||(48823905-48823942)
chr1 (132-168)||(8337933-8337969)
chr1 (126-162)||(21630068-21630104)
chr1 (126-162)||(28395663-28395699)
chr1 (52-108)||(46932062-46932117)
chr1 (56-98)||(33219663-33219705)
chr1 (52-106)||(48993919-48993973)
chr1 (126-168)||(49444987-49445029)
chr1 (100-129)||(7788307-7788336)
chr1 (56-121)||(28395643-28395708)
chr1 (131-168)||(34062229-34062266)
chr1 (126-158)||(9157340-9157372)
chr1 (132-168)||(29371388-29371424)
chr1 (126-162)||(32540824-32540860)
chr1 (126-162)||(37155072-37155108)
chr1 (126-162)||(48993993-48994029)
[»] chr5 (37 HSPs)
chr5 (40-162)||(19655148-19655270)
chr5 (39-168)||(19598321-19598449)
chr5 (54-162)||(30117854-30117962)
chr5 (58-168)||(16439146-16439256)
chr5 (56-168)||(3180080-3180191)
chr5 (40-162)||(291087-291209)
chr5 (64-162)||(29699381-29699479)
chr5 (82-162)||(3899871-3899951)
chr5 (82-162)||(16971176-16971256)
chr5 (82-168)||(16802476-16802562)
chr5 (100-162)||(2953240-2953302)
chr5 (53-150)||(12913806-12913903)
chr5 (82-162)||(28818949-28819029)
chr5 (80-156)||(38134405-38134481)
chr5 (111-162)||(2093963-2094014)
chr5 (53-98)||(12913893-12913938)
chr5 (52-112)||(30117830-30117890)
chr5 (52-106)||(2953272-2953326)
chr5 (52-109)||(291176-291233)
chr5 (50-114)||(1638457-1638521)
chr5 (53-112)||(2356348-2356406)
chr5 (126-168)||(3899859-3899901)
chr5 (64-106)||(7009410-7009452)
chr5 (52-106)||(16971226-16971280)
chr5 (126-168)||(26662419-26662461)
chr5 (126-168)||(26934014-26934056)
chr5 (52-106)||(29699449-29699503)
chr5 (112-162)||(43225372-43225422)
chr5 (92-149)||(2935869-2935926)
chr5 (117-162)||(14167178-14167223)
chr5 (88-149)||(26662437-26662498)
chr5 (88-149)||(26934032-26934093)
chr5 (53-105)||(31147140-31147193)
chr5 (117-162)||(37325584-37325629)
chr5 (54-139)||(39031200-39031285)
chr5 (38-78)||(2953195-2953235)
chr5 (50-106)||(13312264-13312320)
[»] chr3 (28 HSPs)
chr3 (53-175)||(33689179-33689301)
chr3 (40-162)||(41752954-41753076)
chr3 (39-162)||(47492073-47492196)
chr3 (40-162)||(51046099-51046221)
chr3 (37-168)||(43139729-43139860)
chr3 (82-168)||(47677275-47677361)
chr3 (82-162)||(1801472-1801552)
chr3 (56-168)||(18321657-18321769)
chr3 (82-162)||(30476500-30476580)
chr3 (80-168)||(29031734-29031822)
chr3 (52-160)||(30734430-30734538)
chr3 (53-150)||(55223235-55223332)
chr3 (54-162)||(30580782-30580890)
chr3 (52-106)||(1801448-1801502)
chr3 (52-106)||(45103111-45103165)
chr3 (88-150)||(50524740-50524802)
chr3 (88-165)||(50550013-50550090)
chr3 (52-106)||(41753046-41753100)
chr3 (117-162)||(45103135-45103180)
chr3 (132-168)||(47677337-47677373)
chr3 (54-109)||(51046077-51046132)
chr3 (60-98)||(34060203-34060241)
chr3 (82-168)||(49418711-49418797)
chr3 (52-98)||(50524792-50524838)
chr3 (132-168)||(1801528-1801564)
chr3 (132-168)||(1801577-1801613)
chr3 (133-177)||(39385771-39385815)
chr3 (132-168)||(49414505-49414541)
[»] chr8 (26 HSPs)
chr8 (41-162)||(35440995-35441116)
chr8 (40-162)||(5033151-5033273)
chr8 (39-168)||(8243408-8243537)
chr8 (39-162)||(33841617-33841740)
chr8 (41-162)||(10086748-10086869)
chr8 (52-162)||(5667099-5667209)
chr8 (52-162)||(8796424-8796534)
chr8 (37-162)||(45191153-45191278)
chr8 (82-162)||(39850987-39851067)
chr8 (53-168)||(34229644-34229759)
chr8 (52-123)||(43844534-43844605)
chr8 (95-167)||(34541824-34541896)
chr8 (82-161)||(4958631-4958709)
chr8 (50-162)||(35031640-35031753)
chr8 (40-120)||(2581815-2581895)
chr8 (100-162)||(31159901-31159963)
chr8 (52-112)||(45191129-45191189)
chr8 (126-168)||(6296625-6296667)
chr8 (40-106)||(22649835-22649901)
chr8 (88-143)||(6296643-6296698)
chr8 (54-109)||(10086836-10086891)
chr8 (52-106)||(5033243-5033297)
chr8 (40-98)||(5667187-5667245)
chr8 (113-162)||(37618753-37618802)
chr8 (126-162)||(5033187-5033223)
chr8 (132-168)||(39850975-39851011)
[»] chr4 (31 HSPs)
chr4 (39-162)||(23444295-23444418)
chr4 (41-162)||(51265436-51265557)
chr4 (40-162)||(6271692-6271814)
chr4 (64-162)||(47661856-47661954)
chr4 (82-162)||(42375042-42375122)
chr4 (82-168)||(47404605-47404691)
chr4 (42-139)||(30861823-30861920)
chr4 (80-165)||(52028579-52028664)
chr4 (82-168)||(40789211-40789297)
chr4 (100-167)||(24006091-24006158)
chr4 (35-168)||(31430481-31430602)
chr4 (52-162)||(35682168-35682278)
chr4 (82-168)||(55090016-55090102)
chr4 (100-168)||(50384125-50384193)
chr4 (52-165)||(26186039-26186150)
chr4 (88-162)||(47762646-47762720)
chr4 (103-167)||(28693944-28694008)
chr4 (82-162)||(53954642-53954722)
chr4 (50-115)||(3862619-3862684)
chr4 (50-115)||(3871376-3871441)
chr4 (100-168)||(45591430-45591498)
chr4 (100-160)||(25818401-25818461)
chr4 (80-151)||(38714853-38714924)
chr4 (52-106)||(42375092-42375146)
chr4 (88-161)||(31532716-31532789)
chr4 (133-165)||(17285813-17285845)
chr4 (54-162)||(44379934-44380042)
chr4 (131-167)||(53954631-53954667)
chr4 (52-106)||(47661924-47661978)
chr4 (139-168)||(24006151-24006180)
chr4 (132-177)||(40789190-40789235)
[»] chr2 (31 HSPs)
chr2 (40-162)||(16514414-16514536)
chr2 (64-168)||(15011294-15011398)
chr2 (40-162)||(29508716-29508839)
chr2 (64-162)||(14470618-14470716)
chr2 (82-162)||(6217250-6217330)
chr2 (90-161)||(37961746-37961817)
chr2 (82-168)||(2828616-2828702)
chr2 (40-168)||(9173001-9173129)
chr2 (82-162)||(29925596-29925676)
chr2 (52-162)||(14229379-14229479)
chr2 (85-168)||(37762021-37762104)
chr2 (88-162)||(38933625-38933699)
chr2 (64-161)||(6721965-6722062)
chr2 (82-168)||(2893995-2894081)
chr2 (54-106)||(33018627-33018679)
chr2 (52-106)||(6217226-6217280)
chr2 (52-109)||(6722030-6722087)
chr2 (53-150)||(24115923-24116020)
chr2 (50-162)||(32545786-32545900)
chr2 (47-106)||(14229350-14229409)
chr2 (88-162)||(14892299-14892372)
chr2 (52-98)||(14892350-14892396)
chr2 (126-168)||(38933607-38933649)
chr2 (126-168)||(2828604-2828646)
chr2 (131-168)||(2893983-2894020)
chr2 (53-98)||(24116010-24116055)
chr2 (50-106)||(29508690-29508747)
chr2 (132-168)||(6217306-6217342)
chr2 (126-162)||(6721977-6722013)
chr2 (132-168)||(29925652-29925688)
chr2 (40-76)||(38933586-38933622)
[»] scaffold0161 (2 HSPs)
scaffold0161 (38-161)||(27247-27370)
scaffold0161 (52-98)||(27222-27268)
[»] chr6 (13 HSPs)
chr6 (37-168)||(551185-551316)
chr6 (53-160)||(17750906-17751012)
chr6 (86-162)||(12343136-12343212)
chr6 (50-147)||(24587461-24587558)
chr6 (82-168)||(10521869-10521955)
chr6 (89-167)||(2315325-2315403)
chr6 (39-106)||(24975741-24975808)
chr6 (80-162)||(13043487-13043569)
chr6 (88-162)||(24618627-24618701)
chr6 (126-168)||(24618677-24618719)
chr6 (126-168)||(31654325-31654367)
chr6 (53-112)||(24618604-24618663)
chr6 (82-129)||(31654337-31654384)
[»] scaffold0047 (2 HSPs)
scaffold0047 (82-168)||(63789-63875)
scaffold0047 (132-168)||(63777-63813)
[»] scaffold0586 (3 HSPs)
scaffold0586 (53-151)||(7084-7181)
scaffold0586 (53-106)||(7050-7103)
scaffold0586 (126-162)||(7123-7159)
[»] scaffold0016 (1 HSPs)
scaffold0016 (82-160)||(49731-49809)
[»] scaffold0481 (1 HSPs)
scaffold0481 (101-168)||(2907-2974)
[»] scaffold1033 (1 HSPs)
scaffold1033 (102-165)||(2265-2328)
[»] scaffold1029 (1 HSPs)
scaffold1029 (102-165)||(2265-2328)
[»] scaffold0536 (1 HSPs)
scaffold0536 (64-162)||(4918-5013)
[»] scaffold0180 (2 HSPs)
scaffold0180 (53-106)||(19125-19178)
scaffold0180 (103-156)||(19154-19207)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 169 - 368
Target Start/End: Complemental strand, 45038330 - 45038138
Alignment:
Q  169 aaggtcattatttaatttgccaataattaaaacgacaatgttttctttttcgataatataaaagacatttaatttctttgctaagcaacaatccaccctt 268  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  45038330 aaggtcattatttaatttgccagtaattaaaacgacaatgttttctttttcgataatataaaagacattt-----ctttgctaagcaacaatccaccctt 45038236  T
Q  269 caaaattgaccgagatcaatatagacatagaaaacttcccacattttcacatgaaatagacaagagaccctttacacaataaaattccatcgcatttgca 368  Q
    | |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45038235 ctaaattgaccga--tcaatatagacatagaaaacttcccacaatttcacatgaaatagacaagagaccctttacacaataaaattccatcgcatttgca 45038138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 11016857 - 11016981
Alignment:
Q  38 agggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgt 137  Q
    ||||||||||| | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || |||||||||||||||||||  ||||||    
T  11016857 agggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgt 11016956  T
Q  138 gacattgtgattggtcaatgtcacc 162  Q
    |||||||||||||||||||||||||    
T  11016957 gacattgtgattggtcaatgtcacc 11016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 34854843 - 34854715
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||     
T  34854843 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtgg 34854744  T
Q  140 cattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||| |||||||||| |||||    
T  34854743 cattgtgattggccaatgtcaccaaactc 34854715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 41018376 - 41018248
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||  ||||||||||||||||||| |||||||||||||||||||||| |||||| ||    
T  41018376 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattggga 41018277  T
Q  140 cattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||| ||||||||||||||||    
T  41018276 cattgtgattggccaatgtcacccaactc 41018248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 38975795 - 38975917
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||     
T  38975795 ggaaaatacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgg 38975894  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||| | |||| |||||||||||    
T  38975895 cattataattgatcaatgtcacc 38975917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 4290537 - 4290657
Alignment:
Q  42 aaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgaca 141  Q
    ||||||| | |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |  ||||||||||||||||||| | |||||||||    
T  4290537 aaaatacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtgaca 4290636  T
Q  142 ttgtgattggtcaatgtcacc 162  Q
    |||||||||| ||||||||||    
T  4290637 ttgtgattggccaatgtcacc 4290657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 15027532 - 15027654
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | ||| |||||||||||  |||||||||| | ||||  |||||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  15027532 ggaaaatacttgggtaacatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtga 15027631  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||||||||||||||||||||||    
T  15027632 cattgtgattggtcaatgtcacc 15027654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 27028932 - 27028813
Alignment:
Q  49 ataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgat 148  Q
    |||||||||||||| |||| |||  ||||| | ||||||||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  27028932 ataggtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtgat 27028833  T
Q  149 tggtcaatgtcacccaactc 168  Q
    ||  |||||| |||||||||    
T  27028832 tgtccaatgttacccaactc 27028813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 48000769 - 48000849
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacagacattgtggcattgtgattggtcaatgtcacc 48000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 7672017 - 7671934
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 165  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||  ||||||||||||    
T  7672017 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggctaatgtcacccaa 7671934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 29053456 - 29053334
Alignment:
Q  37 aagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattg 136  Q
    |||||||||||| | |||||||||||||||| |||||||||          |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  29053456 aagggaaaatacttgggtgacatagagttgggtgacattggc---------caatcacaatgccacaatgtttgtgtttctctctctttcacaagcattg 29053366  T
Q  137 tgacattgtgattggtcaatgtcacccaactc 168  Q
     | |||||||||||| |||||||||| |||||    
T  29053365 aggcattgtgattggccaatgtcaccaaactc 29053334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 45231996 - 45231874
Alignment:
Q  42 aaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgaca 141  Q
    ||||||| | |||||||||||||||| |||||||||| | ||||| |||||||||||  |||||| || |||||||||||||||||    ||  ||| ||    
T  45231996 aaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttca----caaagtggca 45231901  T
Q  142 ttgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||||||||||||||||||    
T  45231900 ttgtgattggtcaatgtcacccaactc 45231874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 42628333 - 42628407
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||| |||||    
T  42628333 caatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtgattggccaatatcacc 42628407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 22764819 - 22764753
Alignment:
Q  69 tgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcatt 135  Q
    |||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  22764819 tgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 4649352 - 4649440
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctc--tctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||||||||| |||||| || ||||||||  ||||||||||| |||| |||||||||||||||  |||||||||| |||||    
T  4649352 attggtcaatcacaatgctacaatgcttgtgtttctctctctctttcacaagcatcgtgacattgtgattgaccaatgtcaccaaactc 4649440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 48000683 - 48000750
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||| | |||||||| ||||||| |||||||||| | |||| ||||||||||||||||||||    
T  48000683 gggaaaatacttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatg 48000750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 30217588 - 30217504
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 138  Q
    ||||||||||||| | |||||||| | | ||| | ||||||||||  || ||||||||||||||||||||||||||| ||||||||    
T  30217588 gtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcattgtg 30217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 48000769 - 48000720
Alignment:
Q  113 tttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  48000769 tttctctctctttcacaagcattgtggcattgtgattgatcaatgtcacc 48000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 10419490 - 10419576
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||| ||||  |||||  || ||||||||||||||||||| |  |||||||||||||||  | |||||||||| |||||    
T  10419490 attggtcaatcataatgttacaatacttgtgtttctctctctttcacaagttttgtgacattgtgatcagccaatgtcaccaaactc 10419576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 41945991 - 41945945
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||    
T  41945991 ggtgacataaagttgagtgacattggtaatattggtcaatcacaatg 41945945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 42628431 - 42628385
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    |||||||||||||||| |||||||||| ||||||| |||||||||||    
T  42628431 ggtgacatagagttgggtgacattggtgatattggccaatcacaatg 42628385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 11017005 - 11016948
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 109  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| ||||||||||    
T  11017005 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgttt 11016948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 42628352 - 42628315
Alignment:
Q  131 gcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||| |||||||||||||||||||||||||||||    
T  42628352 gcattgtggcattgtgattggtcaatgtcacccaactc 42628315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 41945859 - 41945955
Alignment:
Q  54 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 150  Q
    ||||||||| |||  |||||||| | | ||| |||||||| |||| || |||||||  |||| | ||||||||||| ||||||| ||||||||||||    
T  41945859 tgacatagaattgagtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgtaacattgtgattg 41945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 48000869 - 48000818
Alignment:
Q  56 acatagagttggatgacattggtaatattggtcaatcacaatgccacaatgt 107  Q
    |||||||||||| |||||||||| | ||||  ||||||||||||||||||||    
T  48000869 acatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgt 48000818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 45038357 - 45038327
Alignment:
Q  10 agatgaatacatacactgccgcaatagaagg 40  Q
    |||||||||||||||||||||||||||||||    
T  45038357 agatgaatacatacactgccgcaatagaagg 45038327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 4290681 - 4290628
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaat 105  Q
    ||||||||| |||||| |||||||||| | ||||| ||||||||||| ||||||    
T  4290681 ggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaat 4290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 27028730 - 27028795
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttct 117  Q
    ||||||||| |||||  |||||||||| | ||||| ||||||||||| ||||||| || |||||||    
T  27028730 ggtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgtttct 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 29053396 - 29053432
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  29053396 cattgtggcattgtgattggccaatgtcacccaactc 29053432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 38975943 - 38975887
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| | |||||||||| | |||| ||||| | ||||||||||||    
T  38975943 taggtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatg 38975887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 5995358 - 5995481
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 138  Q
    |||||||||| | |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  5995358 gggaaaatacttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 5995457  T
Q  139 acattgtgattggtcaatgtcacc 162  Q
     |||||||||||||||||||||||    
T  5995458 gcattgtgattggtcaatgtcacc 5995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 29179745 - 29179623
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  29179745 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 29179646  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||| |||||||    
T  29179645 cattgtgattggtcagtgtcacc 29179623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 48994065 - 48993943
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||  ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  48994065 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 48993966  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||||||||||||||||||||||    
T  48993965 cattgtgattggtcaatgtcacc 48993943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 37155036 - 37155164
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||| | |||||||||| | ||||| ||||||||||| ||||||| || ||||||||||||||||||| | |||||||    
T  37155036 ggaaaatacttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtga 37155135  T
Q  140 cattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||| ||||||||||||||||    
T  37155136 cattgtgattggccaatgtcacccaactc 37155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 48498405 - 48498527
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| ||||||| || | |||||||||||| ||| ||||||||||| ||||||||||||||||||| |||| || |    
T  48498405 ggaaaatacttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcatggtaa 48498504  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||||||||||||||||||||||    
T  48498505 cattgtgattggtcaatgtcacc 48498527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 34062241 - 34062327
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34062241 attggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtcacccaactc 34062327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 9157313 - 9157428
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggt 152  Q
    ||||||||||||||| |||||||||||| ||||  ||||||||||| ||||||| || |||||||||||||||| || ||||||||| |||||||||| |    
T  9157313 gtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtgattgat 9157412  T
Q  153 caatgtcacccaactc 168  Q
    |||||||| |||||||    
T  9157413 caatgtcaaccaactc 9157428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 44706920 - 44706806
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgaca-ttgtgattg 150  Q
    |||||||||||||||| |||||||||| | ||||| ||||||||||||| ||||| || ||||||||||||||||||| |||||||| || |||||||||    
T  44706920 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatttgtgattg 44706821  T
Q  151 gtcaatgtcacccaa 165  Q
    | |||||||||||||    
T  44706820 gccaatgtcacccaa 44706806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 32540884 - 32540774
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    ||||||||||| ||||||||||||||| | ||||  |||||||||||  |||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  32540884 ggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 32540785  T
Q  152 tcaatgtcacc 162  Q
     ||||| ||||    
T  32540784 ccaatgccacc 32540774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 29371400 - 29371480
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  29371400 attggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatatcacc 29371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 4609007 - 4609114
Alignment:
Q  61 gagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtca 160  Q
    ||||||| |||||| ||| | ||||  | ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  4609007 gagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtca 4609106  T
Q  161 cccaactc 168  Q
    ||||||||    
T  4609107 cccaactc 4609114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 1091680 - 1091582
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 150  Q
    |||||||||||||||| ||| |||||| |  |||  ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  1091680 ggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 17127700 - 17127591
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    ||||| |||||||| | ||||||| || | ||||  |||||| |||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  17127700 ggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 17127601  T
Q  152 tcaatgtcac 161  Q
    ||||||||||    
T  17127600 tcaatgtcac 17127591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 741608 - 741528
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||| ||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  741608 attggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgggcaatgtcacc 741528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 8337951 - 8337877
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||  ||||||||||    
T  8337951 caatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcacc 8337877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 46334046 - 46333966
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  46334046 caatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtgattggccaatgtcatccaactc 46333966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 19711316 - 19711200
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgatt 149  Q
    ||||||| ||| |||| | |||||||||||| |||||   || |||||| ||||||  ||||||||||||||  |||||| ||||||| |||||||||||    
T  19711316 taggtgatataaagtttggtgacattggtaacattggctgattacaatgtcacaattcttatgtttctctct--ttcacatgcattgtaacattgtgatt 19711219  T
Q  150 ggtcaatgtcacccaactc 168  Q
    |||||||||||||||||||    
T  19711218 ggtcaatgtcacccaactc 19711200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 1819566 - 1819500
Alignment:
Q  111 tgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactcaaggtcatt 177  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||    
T  1819566 tgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcatt 1819500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 45728294 - 45728396
Alignment:
Q  57 catagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaat 156  Q
    ||||||||||| ||| |||||| ||||||  ||||||||||  ||||||| || ||||||||||||||||||| ||||| ||||||||||||||  ||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcattatgacattgtgattgaccaat 45728393  T
Q  157 gtc 159  Q
    |||    
T  45728394 gtc 45728396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 47303433 - 47303513
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||| || ||||||| |||||||||||||||||||  |||||||||||||||||||  |||||||||| |||||    
T  47303433 caatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcacctaactc 47303513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 36290543 - 36290456
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    |||||||||||||||| ||||||||||   ||||  ||||||||||| |||||| ||| ||||||||||||||||||| |||||||||    
T  36290543 ggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtga 36290456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 46931986 - 46932061
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtt 114  Q
    |||||||||| | |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||| ||||    
T  46931986 gggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtt 46932061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 38674611 - 38674525
Alignment:
Q  80 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||| |||| ||||||| || |||||||||||  |||||| ||||||||||||||||||||| |||| |||||||||||    
T  38674611 atattggccaatcataatgtcacaatgcttgtgtttctctct--ttcacaagcattgtgacattgtgattggccaatatcacccaactc 38674525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 15220843 - 15220923
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||| ||  ||||||| || ||||||||||||||||||| ||||||||| ||||||||||| |||| |||||    
T  15220843 attggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagcattgtgagattgtgattggccaatatcacc 15220923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 28928867 - 28928799
Alignment:
Q  100 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| ||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||| |||||    
T  28928867 cacagtgtttgtgtttctctctctttcacaagcactgtgacattgtgattggccaatgtcaccaaactc 28928799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 33219605 - 33219685
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| ||||||||||||  |||||| || ||||| ||||||||||||| ||||| |||||||||||||| |||||||||||    
T  33219605 attgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtgattgatcaatgtcacc 33219685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 49445017 - 49444939
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| ||||||||||||||||||| || ||||||||||||  ||||| ||||||| |||||||||||| || ||||||||    
T  49445017 attggccaatcacaatgccacaatgcttgtgtttctctctc--tcacaagcattgtaacattgtgattgatcgatgtcacc 49444939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 5694995 - 5694910
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||| |||||| |||||| ||| ||||||||||||||||||| ||||| | | ||||||||||  |||||||||| |||||    
T  5694995 attggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcatt-taatattgtgattgaccaatgtcaccaaactc 5694910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 5995505 - 5995451
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    ||||||||||||||||||||||||||| | ||||  |||||||||||||||||||    
T  5995505 ggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatg 5995451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 21630045 - 21630118
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttc 126  Q
    |||||||| |||||| |||||||||| | ||||  ||||||||||| ||||||| || ||||||||||||||||    
T  21630045 gtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 15220947 - 15220893
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||  |||||||    
T  15220947 ggtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatg 15220893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 46334022 - 46334064
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  46334022 cacaagcattgtgacattgtgattggtcaatgtcatccaactc 46334064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 48605053 - 48604967
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||| |||| | |||| ||||||| ||  ||||||||||||||||||   ||||||||||||||||||  |||||||||| |||||    
T  48605053 attggccaattataatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtgattgaccaatgtcacctaactc 48604967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 48823942 - 48823905
Alignment:
Q  131 gcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  48823942 gcattgtgacattgtgattggccaatgtcacccaactc 48823905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 8337933 - 8337969
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||||||||||||||||||||||||||    
T  8337933 cattgtggcattgtgattggtcaatgtcacccaactc 8337969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 21630104 - 21630068
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21630104 cacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 28395699 - 28395663
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28395699 cacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 46932117 - 46932062
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtt 108  Q
    |||||||||||||||| |||||||||| | ||||  |||||||||||||||||||||    
T  46932117 ggtgacatagagttgg-tgacattggtgacattgaccaatcacaatgccacaatgtt 46932062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 33219705 - 33219663
Alignment:
Q  56 acatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  33219705 acatagagttggatgacattggtgacattgatcaatcacaatg 33219663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 48993919 - 48993973
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||    
T  48993919 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 48993973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 49444987 - 49445029
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  49444987 cacaagcattgtggcattgtgattggccaatgtcacccaactc 49445029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 7788336 - 7788307
Alignment:
Q  100 cacaatgtttatgtttctctctctttcaca 129  Q
    ||||||||||||||||||||||||||||||    
T  7788336 cacaatgtttatgtttctctctctttcaca 7788307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 28395643 - 28395708
Alignment:
Q  56 acatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctct 121  Q
    |||||||||||  |||||||||| | ||||  ||||||||||| ||||||| || |||||||||||    
T  28395643 acatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 34062266 - 34062229
Alignment:
Q  131 gcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  34062266 gcattgtggcattgtgattggccaatgtcacccaactc 34062229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 9157372 - 9157340
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgt 158  Q
    |||| ||||||||||||||||||||||||||||    
T  9157372 cacaagcattgtgacattgtgattggtcaatgt 9157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 29371424 - 29371388
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||||||||||| |||||||||| |||||    
T  29371424 cattgtgacattgtgattggccaatgtcacctaactc 29371388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 32540824 - 32540860
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  32540824 cacaagcattgtaacattgtgattggtcaatgtcacc 32540860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 37155108 - 37155072
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  37155108 cacaagcattgtgacattgtgattggccaatgtcacc 37155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 48993993 - 48994029
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| |||||||| |||||||||||||||||||||||    
T  48993993 cacaagcattgtggcattgtgattggtcaatgtcacc 48994029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 19655148 - 19655270
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19655148 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtga 19655247  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||||||||||| ||||||||||    
T  19655248 cattgtgattggacaatgtcacc 19655270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 19598321 - 19598449
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 138  Q
    |||||||||| | |||||||||||||||| | |||||||| | |||||||||||||||| |||||||| || ||||||||||||||||||| ||||| ||    
T  19598321 gggaaaatacttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt-tg 19598419  T
Q  139 acattgtgattggtcaatgtcacccaactc 168  Q
    ||||| |||||||| |||||||||||||||    
T  19598420 acattatgattggttaatgtcacccaactc 19598449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 30117962 - 30117854
Alignment:
Q  54 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtc 153  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||| ||||| |  ||||||||||||||||||||||    
T  30117962 tgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtgattggtc 30117863  T
Q  154 aatgtcacc 162  Q
    ||| |||||    
T  30117862 aatatcacc 30117854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 16439146 - 16439256
Alignment:
Q  58 atagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatg 157  Q
    |||||||||| | | |||||| | ||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  16439146 atagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatg 16439245  T
Q  158 tcacccaactc 168  Q
    |||||||||||    
T  16439246 tcacccaactc 16439256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 3180191 - 3180080
Alignment:
Q  56 acatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaa 155  Q
    |||||||||||| | |||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||||| |||||| ||||    
T  3180191 acatagagttgg-taacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattatgattgatcaa 3180093  T
Q  156 tgtcacccaactc 168  Q
    |||||||||||||    
T  3180092 tgtcacccaactc 3180080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 291087 - 291209
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| |  ||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || | ||||| |||||||||||  ||||||||    
T  291087 ggaaaatacttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtga 291186  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    ||||||||||| |||||||||||    
T  291187 cattgtgattgatcaatgtcacc 291209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 29699381 - 29699479
Alignment:
Q  64 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  29699381 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 29699479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 3899871 - 3899951
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3899871 attggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 3899951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 16971176 - 16971256
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16971176 attggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 16971256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 16802476 - 16802562
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||| |||||||||||  ||||| ||| ||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||    
T  16802476 attggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtgacattctgattggtcaatgtcactcaactc 16802562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 2953240 - 2953302
Alignment:
Q  100 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2953240 cacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 2953302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 12913806 - 12913903
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 150  Q
    |||||||| |||||  |||||||||| | ||||| ||||||||||| ||||||  || ||| ||||||||||||||| ||||| ||||||||||||||    
T  12913806 gtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcattatgacattgtgattg 12913903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 28818949 - 28819029
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||| ||||||  || | ||||||||||||||||| ||||||||||||| ||||||  ||||||||||    
T  28818949 attggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtgacattatgattgaccaatgtcacc 28819029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 38134481 - 38134405
Alignment:
Q  80 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaat 156  Q
    ||||||| ||||||||||| ||||||| || ||||||| ||||||||||  ||||||||||||||||||||| ||||    
T  38134481 atattggccaatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtgattggccaat 38134405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 2094014 - 2093963
Alignment:
Q  111 tgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  2094014 tgtttctctctctttcacaagcattatgacattgtgattgatcaatgtcacc 2093963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 12913938 - 12913893
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||    
T  12913938 gtgacatagagttgggtgacattggtgatattggtcaatcacaatg 12913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 30117830 - 30117890
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatg 112  Q
    ||||| |||||||||| |||||||||| ||||||  ||||||||||| |||||||||||||    
T  30117830 ggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatg 30117890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 2953326 - 2953272
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| | ||||| ||||||||||| |||||||    
T  2953326 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatg 2953272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 291233 - 291176
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 109  Q
    ||||| |||||||||| |||||||||| | |||| |||||||||||| ||||||||||    
T  291233 ggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgttt 291176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 1638457 - 1638521
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtt 114  Q
    ||||||| |||||||||| ||| ||| || ||||||| ||||||||||| |||||||||| ||||    
T  1638457 taggtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaatgtttgtgtt 1638521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 2356406 - 2356348
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatg 112  Q
    |||||||||||||||||||||||||| | ||||| ||||||| ||| ||||||| |||||    
T  2356406 gtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatgcttatg 2356348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 3899901 - 3899859
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  3899901 cacaagcattgtggcattgtgattggccaatgtcacccaactc 3899859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 7009452 - 7009410
Alignment:
Q  64 ttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    ||||||||||||||| ||||||||||||||||||  |||||||    
T  7009452 ttggatgacattggtgatattggtcaatcacaatatcacaatg 7009410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 16971280 - 16971226
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||    
T  16971280 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 16971226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 26662461 - 26662419
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||    
T  26662461 cacaagcaatgtaacattgtgattggtcaatgtcacccaactc 26662419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 26934056 - 26934014
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||    
T  26934056 cacaagcaatgtaacattgtgattggtcaatgtcacccaactc 26934014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 29699503 - 29699449
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| ||| |||||| | ||||| ||||||||||| |||||||    
T  29699503 ggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatg 29699449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 43225422 - 43225372
Alignment:
Q  112 gtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||||||| |||||||| |||||| ||||||| |||||||||||| |||||    
T  43225422 gtttctctttctttcacgggcattatgacattctgattggtcaatatcacc 43225372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 2935926 - 2935869
Alignment:
Q  92 cacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgatt 149  Q
    ||||||| |||||||||| ||||||||| ||||| |||  |||| |||||||||||||    
T  2935926 cacaatgtcacaatgtttgtgtttctctatcttttacaaacattatgacattgtgatt 2935869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 14167223 - 14167178
Alignment:
Q  117 tctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||| | ||||||||||||||||| ||||| ||||||    
T  14167223 tctctctttcacaaggattgtgacattgtgattcgtcaaagtcacc 14167178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 26662437 - 26662498
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgatt 149  Q
    |||||||||||  ||| || || ||||||||||| ||||||| | |||||||||||||||||    
T  26662437 caatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtgatt 26662498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 26934032 - 26934093
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgatt 149  Q
    |||||||||||  ||| || || ||||||||||| ||||||| | |||||||||||||||||    
T  26934032 caatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtgatt 26934093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 31147140 - 31147193
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcac-aatgccacaat 105  Q
    ||||||||||||||  |||||||| ||||||||| ||||||| |||||||||||    
T  31147140 gtgacatagagttgagtgacattgataatattggccaatcacaaatgccacaat 31147193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 37325629 - 37325584
Alignment:
Q  117 tctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||| | ||||||||||||||||| ||||||| ||||    
T  37325629 tctctctttcacaaggattgtgacattgtgattcgtcaatgccacc 37325584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 39031285 - 39031200
Alignment:
Q  54 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||||| || |||||||||| | | || |||||||||||  || ||| ||| | ||||||| ||||||||| |||||||||    
T  39031285 tgacatagagtggggtgacattggtgacactgatcaatcacaatatcataatatttgtatttctctttctttcacaagcattgtga 39031200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 2953195 - 2953235
Alignment:
Q  38 agggaaaatacataggtgacatagagttggatgacattggt 78  Q
    ||||||||||| | |||||||||||||||| ||||||||||    
T  2953195 agggaaaatacttgggtgacatagagttgggtgacattggt 2953235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 13312264 - 13312320
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| | |||||||| | | |||| |||||||||||| |||||||    
T  13312264 taggtgacatagagttaggtgacattgatgacattgatcaatcacaatgtcacaatg 13312320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 33689179 - 33689301
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggt 152  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||     
T  33689179 gtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggc 33689278  T
Q  153 caatgtcacccaactcaaggtca 175  Q
    |||||||||||||||||| ||||    
T  33689279 caatgtcacccaactcaatgtca 33689301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 41752954 - 41753076
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||     
T  41752954 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtgg 41753053  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||||||||||| ||||||||||    
T  41753054 cattgtgattggccaatgtcacc 41753076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 47492196 - 47492073
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 138  Q
    |||||||||  | |||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| || ||||||||||| ||||||| ||||||||    
T  47492196 gggaaaatagttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtg 47492097  T
Q  139 acattgtgattggtcaatgtcacc 162  Q
    ||||||||||||| ||||||||||    
T  47492096 acattgtgattggccaatgtcacc 47492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 51046221 - 51046099
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | ||||||||||||||||||||||||||| | ||||| |||||||||||||| |||| || |||||||||||||||||||  ||||||||    
T  51046221 ggaaaatacttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtga 51046122  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||| |||||| |||||||||||    
T  51046121 cattatgattgatcaatgtcacc 51046099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 43139860 - 43139729
Alignment:
Q  37 aagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattg 136  Q
    |||||||||||  | |||||||||||||||| |||||||||| | ||||| |||| |||||||||||||| || ||||||||||||||||||| |||||     
T  43139860 aagggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcattc 43139761  T
Q  137 tgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||||||  | ||||||||||||||    
T  43139760 tgacattgtgattgaccgatgtcacccaactc 43139729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 47677361 - 47677275
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  47677361 attgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgatcggtcaatgtcaccaaactc 47677275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 1801552 - 1801472
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  1801552 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcacc 1801472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 18321657 - 18321769
Alignment:
Q  56 acatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaa 155  Q
    |||||||||||| ||| |||||| | ||||||||||||||||| ||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||  |||    
T  18321657 acatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacattgtgattgaccaa 18321756  T
Q  156 tgtcacccaactc 168  Q
    ||||| |||||||    
T  18321757 tgtcatccaactc 18321769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 30476580 - 30476500
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  30476580 attggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 29031822 - 29031734
Alignment:
Q  80 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||| ||||| |||||    
T  29031822 atattggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacctaactc 29031734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 30734538 - 30734430
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    |||||||||||||| | |||||||||| | ||||| ||||||||||| || |||  || ||||||||| ||||||||| |||||||||||||||||| ||    
T  30734538 ggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcgg 30734439  T
Q  152 tcaatgtca 160  Q
    |||||||||    
T  30734438 tcaatgtca 30734430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 55223235 - 55223332
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 150  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||   | |||  |||||||||||||||||||||| ||||||||||||| ||||||    
T  55223235 gtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtgacattatgattg 55223332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 30580890 - 30580782
Alignment:
Q  54 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtc 153  Q
    ||||||||| |||| ||||||| || | ||||||||||||||||| |||| || || ||||||| |||||||||||   ||||||||||| |||||||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacattatgattggtc 30580791  T
Q  154 aatgtcacc 162  Q
    ||| |||||    
T  30580790 aatatcacc 30580782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 1801448 - 1801502
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||    
T  1801448 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 1801502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 45103111 - 45103165
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||| |||||||    
T  45103111 ggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatg 45103165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 50524740 - 50524802
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 150  Q
    |||||| |||| |||||||||| ||||||||||||||||||| |||| || ||||||||||||    
T  50524740 caatcataatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtgattg 50524802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 50550013 - 50550090
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 165  Q
    ||||||||||   |||||| || |||||||||||||||||||  |||| ||||||| |||||| ||||||||||||||    
T  50550013 caatcacaatattacaatgcttgtgtttctctctctttcacaaacattatgacattatgattgatcaatgtcacccaa 50550090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 41753100 - 41753046
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||  |||||||||| | ||||| |||||||||||||||||||    
T  41753100 ggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatg 41753046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 45103180 - 45103135
Alignment:
Q  117 tctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||    
T  45103180 tctctctttcacaagcattgtgacattgtgattgatcaatatcacc 45103135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 47677337 - 47677373
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47677337 cattgtgacattgtgattgatcaatgtcacccaactc 47677373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 51046077 - 51046132
Alignment:
Q  54 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 109  Q
    |||||||||||||||||| |||||| | |||| ||||||| |||| ||||||||||    
T  51046077 tgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgttt 51046132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 34060203 - 34060241
Alignment:
Q  60 agagttggatgacattggtaatattggtcaatcacaatg 98  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  34060203 agagttggatgacattggtgatattggtcaatcataatg 34060241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 49418797 - 49418711
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||| | |||  || |||| || |||||||||||||||||||   ||| ||||||||||||||  |||| |||||||||||    
T  49418797 attggtcaattataatatcataatgcttgtgtttctctctctttcacaaatattatgacattgtgattgaccaatatcacccaactc 49418711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 50524838 - 50524792
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    |||||||||||||||  |||||||||| ||||| |||||||||||||    
T  50524838 ggtgacatagagttgagtgacattggtgatattagtcaatcacaatg 50524792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 1801528 - 1801564
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  1801528 cattgtggcattgtgattggccaatgtcacccaactc 1801564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 1801577 - 1801613
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  1801577 cattgtggcattgtgattggccaatgtcacccaactc 1801613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 39385771 - 39385815
Alignment:
Q  133 attgtgacattgtgattggtcaatgtcacccaactcaaggtcatt 177  Q
    ||||| ||||||||||||| |||||||||||||||| | ||||||    
T  39385771 attgtaacattgtgattggccaatgtcacccaactctatgtcatt 39385815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 49414505 - 49414541
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  49414505 cattgtgacattgtaattggccaatgtcacccaactc 49414541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 35441116 - 35440995
Alignment:
Q  41 gaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgac 140  Q
    |||||||| | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||    
T  35441116 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgac 35441017  T
Q  141 attgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||||||||    
T  35441016 attgtgattggtcaatgtcacc 35440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 5033151 - 5033273
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||  ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  5033151 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 5033250  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||||||||||||||||||||||    
T  5033251 cattgtgattggtcaatgtcacc 5033273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 8243537 - 8243408
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 138  Q
    |||||||||| | |||||||||||||||| |||||||||| |  |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  8243537 gggaaaatacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 8243438  T
Q  139 acattgtgattggtcaatgtcacccaactc 168  Q
     ||||||||||| |||||||||| ||||||    
T  8243437 gcattgtgattgatcaatgtcactcaactc 8243408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 33841740 - 33841617
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 138  Q
    |||||||||| | |||||||||||||||| |||||||||| | ||||  |||||| |||||||||||| || ||||||||||||||||||| ||||||||    
T  33841740 gggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 33841641  T
Q  139 acattgtgattggtcaatgtcacc 162  Q
    ||| ||||||||||||||||||||    
T  33841640 acaatgtgattggtcaatgtcacc 33841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 10086748 - 10086869
Alignment:
Q  41 gaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgac 140  Q
    |||||||| | ||||||||||| |||| ||||||| || | ||||||||||||||||| || ||||||| |||||||||||||||||||  |||||||||    
T  10086748 gaaaatacttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgac 10086847  T
Q  141 attgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||||||||    
T  10086848 attgtgattggtcaatgtcacc 10086869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 5667099 - 5667209
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| || | ||||||||||||||||| ||||| ||||||||| |||||    
T  5667099 ggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcattatgacattgtaattgg 5667198  T
Q  152 tcaatgtcacc 162  Q
     ||||||||||    
T  5667199 ccaatgtcacc 5667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 8796424 - 8796534
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    |||||||||||||| | ||| ||| || ||||||||||||||||||| ||||||| || ||||||||| ||||||||| ||||||||||||| |||||||    
T  8796424 ggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacattttgattgg 8796523  T
Q  152 tcaatgtcacc 162  Q
    |||||||||||    
T  8796524 tcaatgtcacc 8796534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 45191278 - 45191153
Alignment:
Q  37 aagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattg 136  Q
    ||||| |||||| | |||||||||||||||||||| |||||| | ||||  |||||| ||||  ||||||||| ||||||||||||||||| | ||||||    
T  45191278 aaggggaaatacttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattg 45191179  T
Q  137 tgacattgtgattggtcaatgtcacc 162  Q
    || ||||||||||  |||||||||||    
T  45191178 tggcattgtgattaatcaatgtcacc 45191153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 39850987 - 39851067
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||||||||||||||    
T  39850987 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattataatattgtgattggtcaatgtcacc 39851067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 34229644 - 34229759
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggt 152  Q
    ||||||||||||||| ||||||| || | ||  ||||||||||||| || |||| || ||||||||||||||||||| ||||||||| ||||||||||      
T  34229644 gtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattgac 34229743  T
Q  153 caatgtcacccaactc 168  Q
    |||||||||| |||||    
T  34229744 caatgtcacctaactc 34229759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 43844605 - 43844534
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctct 123  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| || |||||||||||||    
T  43844605 ggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctctct 43844534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 34541896 - 34541824
Alignment:
Q  95 aatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaact 167  Q
    |||||||||||| || ||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||    
T  34541896 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgatattatgattggccaatgtcacccaact 34541824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 4958631 - 4958709
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcac 161  Q
    ||||| ||||||||||| || ||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  4958631 attggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtgac-ttgtgattggtcaatgtcac 4958709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 35031753 - 35031640
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaa-tgtttatgtttctctctctttcacaggcattgtgacattgtgat 148  Q
    |||||||||||||||||  ||| ||| || ||||||||||| ||||||  || || ||  | | ||||||||||||||||| |||||| |||||||||||    
T  35031753 taggtgacatagagttgagtgatatttgtgatattggtcaaccacaatatcataagtgactttttttctctctctttcacaagcattgcgacattgtgat 35031654  T
Q  149 tggtcaatgtcacc 162  Q
    || |||||||||||    
T  35031653 tgatcaatgtcacc 35031640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 2581815 - 2581895
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctc 120  Q
    ||||||||| | ||||||||||| |||| |||||||| | | ||||| ||||||||||||||||||| || ||||||||||    
T  2581815 ggaaaatacttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 31159901 - 31159963
Alignment:
Q  100 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||| |||||||  |||||||||    
T  31159901 cacaatatttttgtttctctctctttcacaagcattgtgacattatgattggcgaatgtcacc 31159963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 45191129 - 45191189
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatg 112  Q
    |||||||||||||||||||| |||||| | |||| | |||||||||||||||||| |||||    
T  45191129 ggtgacatagagttggatgatattggtgacattgattaatcacaatgccacaatgcttatg 45191189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 6296667 - 6296625
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| ||||| ||||||||||||||||||||||||||||||||    
T  6296667 cacaagcattatgacattgtgattggtcaatgtcacccaactc 6296625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 22649835 - 22649901
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    ||||||||| | |||||||||||||||  |||||||||| | |||||  ||||||||||||||||||    
T  22649835 ggaaaatacttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatg 22649901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 6296643 - 6296698
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacatt 143  Q
    ||||||||||| || |||| || ||||||||||||||||||| | |||||||||||    
T  6296643 caatcacaatgtcataatgcttgtgtttctctctctttcacaagtattgtgacatt 6296698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 10086891 - 10086836
Alignment:
Q  54 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 109  Q
    |||||||||||||| |||||||||| | ||||  ||||||||||| ||||||||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgttt 10086836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 5033297 - 5033243
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||    
T  5033297 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 5033243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 5667245 - 5667187
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    ||||||||| | |||||||||||||| |||||||||||| | ||||| |||| ||||||    
T  5667245 ggaaaatacttgggtgacatagagtttgatgacattggtgacattggccaattacaatg 5667187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 37618802 - 37618753
Alignment:
Q  113 tttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||| | ||| | ||||||||||||||||||| ||||||||||    
T  37618802 tttctctctctcttacaaggattgtgacattgtgattggccaatgtcacc 37618753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 5033223 - 5033187
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| |||||||| |||||||||||||||||||||||    
T  5033223 cacaagcattgtggcattgtgattggtcaatgtcacc 5033187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 39851011 - 39850975
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  39851011 cattgtggcattgtgattggccaatgtcacccaactc 39850975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 23444418 - 23444295
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtg 138  Q
    |||||||||  | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  23444418 gggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtg 23444319  T
Q  139 acattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||||||||||    
T  23444318 acattgtgattggtcaatgtcacc 23444295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 51265436 - 51265557
Alignment:
Q  41 gaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgac 140  Q
    |||||||| | |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||    
T  51265436 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgac 51265535  T
Q  141 attgtgattggtcaatgtcacc 162  Q
    ||| ||||||||||||||||||    
T  51265536 attatgattggtcaatgtcacc 51265557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 6271692 - 6271814
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| ||| |||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  6271692 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 6271791  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||||||||||| ||||||||||    
T  6271792 cattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 47661856 - 47661954
Alignment:
Q  64 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47661856 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 47661954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 42375042 - 42375122
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  42375042 attggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacc 42375122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 47404691 - 47404605
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  47404691 attggtcaatcacaatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaactc 47404605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 30861920 - 30861823
Alignment:
Q  42 aaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||| | |||||||||||||||||||| |||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  30861920 aaaatacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 52028579 - 52028664
Alignment:
Q  80 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 165  Q
    ||||||| ||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  52028579 atattggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaa 52028664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 40789211 - 40789297
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||    
T  40789211 attggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatatcaccaaactc 40789297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 24006158 - 24006091
Alignment:
Q  100 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaact 167  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  24006158 cacaatgtttatgtttctctctctttcacaagcattgtgtcattgtgattggccaatgtcacccaact 24006091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 31430602 - 31430481
Alignment:
Q  35 agaagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcat 134  Q
    |||||||||||||| | |||||||||||||||| |||||||||          |||| ||||||||||   |||| ||||||||||||||||| | ||||    
T  31430602 agaagggaaaatacttgggtgacatagagttgggtgacattggc---------caattacaatgccac---gtttgtgtttctctctctttcataagcat 31430515  T
Q  135 tgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||||||||||||||||||||||||||    
T  31430514 tgtgacattgtgattggtcaatgtcacccaactc 31430481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 35682168 - 35682278
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    |||||||||||||| | ||| |||||| | ||||| ||||||||||| || |||  || ||||||||| ||||||||| |||||||||||||||||| ||    
T  35682168 ggtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcgg 35682267  T
Q  152 tcaatgtcacc 162  Q
    |||||||||||    
T  35682268 tcaatgtcacc 35682278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 55090102 - 55090016
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||||||||| ||||||| || ||| ||||||||||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  55090102 attggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtgattgaccaatgtcactcaactc 55090016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 50384193 - 50384125
Alignment:
Q  100 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  50384193 cacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactc 50384125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 26186150 - 26186039
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    |||||||||||||||| | |||||| | | ||||| ||||||||||  ||||||| || |||||||||||  |||||| ||||||||||||||||||||     
T  26186150 ggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtttctctct--ttcacaagcattgtgacattgtgattga 26186053  T
Q  152 tcaatgtcacccaa 165  Q
     |||||||||||||    
T  26186052 ccaatgtcacccaa 26186039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 47762646 - 47762720
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||| || |||  ||||||||||    
T  47762646 caatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtgacattatggttgaccaatgtcacc 47762720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 28694008 - 28693944
Alignment:
Q  103 aatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaact 167  Q
    ||||||| |||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||    
T  28694008 aatgtttgtgtttctctctctttcacaaacattgtgatattgtgattggtcaatgtcatccaact 28693944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 53954642 - 53954722
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| ||||||||||| ||||||| |  |||||||| |||||||||| ||||||||||||||| ||||| ||||||||||    
T  53954642 attggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtgacattgtaattggacaatgtcacc 53954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 3862684 - 3862619
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgttt 115  Q
    |||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || |||||    
T  3862684 taggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 3871441 - 3871376
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgttt 115  Q
    |||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| || |||||    
T  3871441 taggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 45591498 - 45591430
Alignment:
Q  100 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||   |||| ||||||||||    
T  45591498 cacaatgtttgtgtttctctctctttcacaagcattgtgacattatgattgacgaatgccacccaactc 45591430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 25818461 - 25818401
Alignment:
Q  100 cacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtca 160  Q
    ||||||| || |||||||||||||||||||  |||||||||||||||||||  ||||||||    
T  25818461 cacaatgattgtgtttctctctctttcacaatcattgtgacattgtgattgaccaatgtca 25818401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 38714853 - 38714924
Alignment:
Q  80 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    ||||||| ||||||||||| || ||| ||||||||||| | |||||||||  ||||||||||||| ||||||    
T  38714853 atattggccaatcacaatgtcataatatttatgtttctatttctttcacaaacattgtgacattgagattgg 38714924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 42375146 - 42375092
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| | |||| |||||||||||| |||||||    
T  42375146 ggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatg 42375092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 31532789 - 31532716
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcac 161  Q
    ||||||||| | |||||||||| | ||||||||||||| |||   ||||||||||||||||||  |||||||||    
T  31532789 caatcacaacgtcacaatgtttgtatttctctctcttttacatatattgtgacattgtgattgaacaatgtcac 31532716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 17285813 - 17285845
Alignment:
Q  133 attgtgacattgtgattggtcaatgtcacccaa 165  Q
    |||||||||||||||||||||||||||||||||    
T  17285813 attgtgacattgtgattggtcaatgtcacccaa 17285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 44379934 - 44380042
Alignment:
Q  54 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtc 153  Q
    |||||||||||||  |||||||||  | ||||| |||| | |||| ||||||| ||  |||||||||| ||| | | | ||||| |||||||||||||||    
T  44379934 tgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgcttgcgtttctctctattttataagtattgtaacattgtgattggtc 44380033  T
Q  154 aatgtcacc 162  Q
    ||| |||||    
T  44380034 aatatcacc 44380042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 53954667 - 53954631
Alignment:
Q  131 gcattgtgacattgtgattggtcaatgtcacccaact 167  Q
    ||||||||||||||||||||| |||||||||||||||    
T  53954667 gcattgtgacattgtgattggccaatgtcacccaact 53954631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 47661978 - 47661924
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| | ||||  ||||||||||| |||||||    
T  47661978 ggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 47661924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 24006151 - 24006180
Alignment:
Q  139 acattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||||||||||||||||||||||    
T  24006151 acattgtgattggtcaatgtcacccaactc 24006180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 40789235 - 40789190
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactcaaggtcatt 177  Q
    |||||||||||||||||||| |||||||||| ||||| | ||||||    
T  40789235 cattgtgacattgtgattggccaatgtcaccaaactctatgtcatt 40789190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 16514414 - 16514536
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| |||||||||| | ||||| ||||||| |||||| |||| || ||||||||||||||||||| |||||||||    
T  16514414 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtga 16514513  T
Q  140 cattgtgattggtcaatgtcacc 162  Q
    |||||||||||||||||||||||    
T  16514514 cattgtgattggtcaatgtcacc 16514536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 15011294 - 15011398
Alignment:
Q  64 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcaccc 163  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |    
T  15011294 ttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcactc 15011393  T
Q  164 aactc 168  Q
    |||||    
T  15011394 aactc 15011398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 29508839 - 29508716
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||| | |||||||||||||||| ||| |||||| | ||||| ||||||||||||| ||||| || ||||||||||||||||||| ||||||||     
T  29508839 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtgg 29508740  T
Q  140 ca-ttgtgattggtcaatgtcacc 162  Q
    || |||||||||||||||||||||    
T  29508739 catttgtgattggtcaatgtcacc 29508716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 14470716 - 14470618
Alignment:
Q  64 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  14470716 ttggatgatattggtaacattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtgattggtcaatgtcacc 14470618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 6217330 - 6217250
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  6217330 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcacc 6217250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 37961746 - 37961817
Alignment:
Q  90 atcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcac 161  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  37961746 atcacaatgccataatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 37961817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 2828616 - 2828702
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||| ||||||||||| || |||| || ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  2828616 attggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtgacattgtgattggccaatgtcacccaactc 2828702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 9173129 - 9173001
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtga 139  Q
    ||||||||  |||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| || | ||||||| ||||| | | ||||| ||     
T  9173129 ggaaaatatttaggtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctctttcttttataagcattatgg 9173030  T
Q  140 cattgtgattggtcaatgtcacccaactc 168  Q
    |||| ||||    ||||||||||||||||    
T  9173029 cattctgatgaaccaatgtcacccaactc 9173001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 29925676 - 29925596
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||  || ||||||||||    
T  29925676 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtgaggggccaatgtcacc 29925596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 14229479 - 14229379
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    ||||||||||||||||||||||||||          ||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||     
T  14229479 ggtgacatagagttggatgacattgg----------caatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattga 14229390  T
Q  152 tcaatgtcacc 162  Q
     ||||||||||    
T  14229389 ccaatgtcacc 14229379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 37762104 - 37762021
Alignment:
Q  85 ggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||||||||||||  ||||||| || ||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  37762104 ggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtgattggtcaatgtcactcaactc 37762021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 38933625 - 38933699
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  38933625 caatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatgattggccaacgtcacc 38933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 6721965 - 6722062
Alignment:
Q  64 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcac 161  Q
    ||||||||||||||| | ||||  ||||||||||  ||||||| || |||||||||||||||||||  |||||||||||||||||||| |||| ||||    
T  6721965 ttggatgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggccaatatcac 6722062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 2893995 - 2894081
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||| ||||||||||  ||||||| || | ||||||||||||||||| ||||||||||| ||||||||  |||||||| |||||||    
T  2893995 attggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtgacactgtgattgaccaatgtcatccaactc 2894081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 33018679 - 33018627
Alignment:
Q  54 tgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatg 33018627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 6217226 - 6217280
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||    
T  6217226 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatg 6217280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 6722087 - 6722030
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgttt 109  Q
    |||||||||||||||| ||||||| || ||||||| ||||||||||| ||||||||||    
T  6722087 ggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgttt 6722030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 24115923 - 24116020
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattg 150  Q
    |||| |||||||||  | |||||||||| ||||| |||||||||||  ||||||  | |||||| | |||||||||| |||||| |||||||||||||    
T  24115923 gtgagatagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattgcgacattgtgattg 24116020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 32545786 - 32545900
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaat---gtttatgtttctctctctttcacaggcattgtgacattgtg 146  Q
    |||||||||||||||| | |||||||||| | ||||||||| ||| ||| |||||    |||| | ||| ||||||||||| | ||||||||||||| ||    
T  32545786 taggtgacatagagttaggtgacattggtgacattggtcaaccacgatgtcacaagtaagttttt-tttatctctctttcataagcattgtgacattatg 32545884  T
Q  147 attggtcaatgtcacc 162  Q
    ||||| ||||||||||    
T  32545885 attggccaatgtcacc 32545900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 14229350 - 14229409
Alignment:
Q  47 acataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||| |||||||||||||| | |||||||||| | ||||||||||||||||| |||||||    
T  14229350 acattggtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatg 14229409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 14892299 - 14892372
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||| |||| ||||| | ||||||||||||||| | | ||||| |||||||||||| |||||||||||    
T  14892299 caatcacaatgtcaca-tgtttgtctttctctctctttcataagtattgtaacattgtgattgatcaatgtcacc 14892372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 14892396 - 14892350
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||||    
T  14892396 ggtgacatagagttggatgacattggtgacattgatcaatcacaatg 14892350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 38933649 - 38933607
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  38933649 cacaagcattgtggcattgtgattggtcaatgtcacccaactc 38933607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 2828646 - 2828604
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||    
T  2828646 cacaagcattttgacattgtgattggccaatgtcacccaactc 2828604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 2894020 - 2893983
Alignment:
Q  131 gcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  2894020 gcattgtgagattgtgattggccaatgtcacccaactc 2893983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 24116055 - 24116010
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    ||||||||||||||| || |||| || |||||||||||||||||||    
T  24116055 gtgacatagagttgggtgccattagtgatattggtcaatcacaatg 24116010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 29508690 - 29508747
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcac-aatgccacaatg 106  Q
    |||||||||||||||||| |||||||||| | ||||  ||||||| ||||||||||||    
T  29508690 taggtgacatagagttgggtgacattggtgacattgaccaatcacaaatgccacaatg 29508747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 6217306 - 6217342
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  6217306 cattgtggcattgtgattggccaatgtcacccaactc 6217342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 6722013 - 6721977
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  6722013 cacaagcattgtgatattgtgattggtcaatgtcacc 6721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 29925652 - 29925688
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  29925652 cattgtggcattgtgattggccaatgtcacccaactc 29925688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 38933586 - 38933622
Alignment:
Q  40 ggaaaatacataggtgacatagagttggatgacattg 76  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  38933586 ggaaaatacttaggtgacatagagttgggtgacattg 38933622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 27370 - 27247
Alignment:
Q  38 agggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgt 137  Q
    ||||||||||| | ||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| | ||| |    
T  27370 agggaaaatacttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaagaattat 27271  T
Q  138 gacattgtgattggtcaatgtcac 161  Q
    |||||||||||||| |||| ||||    
T  27270 gacattgtgattggccaatatcac 27247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 27222 - 27268
Alignment:
Q  52 ggtgacatagagttggatgacattggtaatattggtcaatcacaatg 98  Q
    |||||||||||||||| ||||||| || ||||||| |||||||||||    
T  27222 ggtgacatagagttgggtgacattagtgatattggccaatcacaatg 27268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 551316 - 551185
Alignment:
Q  37 aagggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattg 136  Q
    |||||||||||  | ||||||||||| |||||||| |||||| | ||||| ||||||||||||||||||| || |||||||||||||||||||  |||||    
T  551316 aagggaaaatatttgggtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattg 551217  T
Q  137 tgacattgtgattggtcaatgtcacccaactc 168  Q
    || |||||||||||  ||||||||||||||||    
T  551216 tggcattgtgattgaccaatgtcacccaactc 551185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 17750906 - 17751012
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggt 152  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||| | ||| ||||||||||||| |||||||||||||||||| ||     
T  17750906 gtgacatagagttg-atgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtgacattgtgatcggc 17751004  T
Q  153 caatgtca 160  Q
    ||||||||    
T  17751005 caatgtca 17751012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 12343136 - 12343212
Alignment:
Q  86 gtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  12343136 gtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 24587461 - 24587558
Alignment:
Q  50 taggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtga 147  Q
    |||||||||||||||||| ||||||| || | ||||||||||||||||| ||||||| || |||||||| || ||||||| |||||||||||||||||    
T  24587461 taggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgacattgtga 24587558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 10521955 - 10521869
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||||||||||| || |||| || ||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||    
T  10521955 attggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtgattggccaatgtcaccaaactc 10521869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 2315403 - 2315325
Alignment:
Q  89 aatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaact 167  Q
    ||||||||| ||| |||| ||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  2315403 aatcacaataccataatgcttatgtttcgctctctttcacaaacattgtgacattgtgattgatcaatgtcacccaact 2315325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 24975741 - 24975808
Alignment:
Q  39 gggaaaatacataggtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    |||||||||| | |||||||||||||||| |||||||||| | |||||||||||||||||||||||||    
T  24975741 gggaaaatacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatg 24975808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 13043487 - 13043569
Alignment:
Q  80 atattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||||||||||||  |||| ||||||| || ||||||||||||||||||| ||||||||| ||||||||| | ||||||||||    
T  13043487 atattggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattagccaatgtcacc 13043569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 24618701 - 24618627
Alignment:
Q  88 caatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    ||||||||||| ||||||| || ||||||||||||||||| | ||||| |||||||||||||| |||||||||||    
T  24618701 caatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtgattgatcaatgtcacc 24618627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 24618677 - 24618719
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  24618677 cacaagcattgtgacattgtgattggtcaacgtcacccaactc 24618719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 31654367 - 31654325
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    |||| ||||||||||||||||||||| ||||||||||||||||    
T  31654367 cacaagcattgtgacattgtgattggccaatgtcacccaactc 31654325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 24618604 - 24618663
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatg 112  Q
    ||||||||||||||| |||||||||| | |||| |||||||||||| || |||| |||||    
T  24618604 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatg 24618663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 31654337 - 31654384
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcaca 129  Q
    ||||| ||||||||||| ||||||| || |||||||||||||||||||    
T  31654337 attggccaatcacaatgtcacaatgcttgtgtttctctctctttcaca 31654384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 63789 - 63875
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  63789 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactc 63875  T

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Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 63813 - 63777
Alignment:
Q  132 cattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  63813 cattgtggcattgtgattggccaatgtcacccaactc 63777  T

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Target: scaffold0586 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 7181 - 7084
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattgg 151  Q
    ||||||||||||||| |||||||||| | ||||| ||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  7181 gtgacatagagttgg-tgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 7084  T

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Target: scaffold0586; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 7050 - 7103
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    ||||||||||||||| |||||||||| ||||| | ||||||||||| |||||||    
T  7050 gtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatg 7103  T

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Target: scaffold0586; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 7123 - 7159
Alignment:
Q  126 cacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  7123 cacaagcattgtgacattgtgattggccaatgtcacc 7159  T

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Target: scaffold0016 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 49809 - 49731
Alignment:
Q  82 attggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtca 160  Q
    ||||| ||||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  49809 attggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtgattggtcaatgtca 49731  T

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Target: scaffold0481 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 2974 - 2907
Alignment:
Q  101 acaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaactc 168  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  2974 acaatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggtcaatatcacccaactc 2907  T

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Target: scaffold1033 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 2265 - 2328
Alignment:
Q  102 caatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 165  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcgcccaa 2328  T

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Target: scaffold1029 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 2265 - 2328
Alignment:
Q  102 caatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacccaa 165  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcgcccaa 2328  T

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Target: scaffold0536 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 5013 - 4918
Alignment:
Q  64 ttggatgacattggtaatattggtcaatcacaatgccacaatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaatgtcacc 162  Q
    |||| ||| |||||| |||||||||||| ||||||  ||| |   ||||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||    
T  5013 ttgggtgatattggtgatattggtcaattacaatgttacact---tatgtttgtctctctttcacaagcattgtaatattgtgattggtcgatgtcacc 4918  T

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Target: scaffold0180 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 19125 - 19178
Alignment:
Q  53 gtgacatagagttggatgacattggtaatattggtcaatcacaatgccacaatg 106  Q
    ||||||||||||||| |||||||| | |||||| |||||||||||| |||||||    
T  19125 gtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatg 19178  T

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Target: scaffold0180; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 19207 - 19154
Alignment:
Q  103 aatgtttatgtttctctctctttcacaggcattgtgacattgtgattggtcaat 156  Q
    ||||||| ||||||||| |||| |||| |||||||||||||||||||| |||||    
T  19207 aatgtttgtgtttctctttcttccacaagcattgtgacattgtgattgatcaat 19154  T

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