View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_23 (Length: 343)
Name: NF6870A_low_23
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_23 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 44 - 306
Target Start/End: Complemental strand, 9804937 - 9804675
Alignment:
| Q |
44 |
atatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggtt |
143 |
Q |
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| T |
9804937 |
atatgaaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggtt |
9804838 |
T |
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| Q |
144 |
ggcatcggcgactggtctatgtcgatctgagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaa |
243 |
Q |
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|||| ||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9804837 |
ggcaacggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaa |
9804738 |
T |
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| Q |
244 |
cggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga |
306 |
Q |
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| T |
9804737 |
cagcgattgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 191 - 334
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
| Q |
191 |
ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga |
290 |
Q |
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|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
9817693 |
ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga |
9817594 |
T |
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| Q |
291 |
aatgaggatgggaggattattttgtttgattgatgtccatctca |
334 |
Q |
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| T |
9817593 |
aatgaggatgggaggattcttttgtttgattgatgtcgatctca |
9817550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 188 - 327
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
| Q |
188 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
287 |
Q |
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||||||| | |||| ||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
9817577 |
ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg |
9817478 |
T |
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| Q |
288 |
agaaatgaggatgggaggattattttgtttgattgatgtc |
327 |
Q |
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| T |
9817477 |
agaaatgaggattggaggattcttttgattgatcgatgtc |
9817438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 9817857 - 9817777
Alignment:
| Q |
50 |
aaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
130 |
Q |
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| T |
9817857 |
aaaaagttttgattaccttttttgcccaaataatggaacgaggttgaagtttcatgaaaattccatcaaaagagataacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
| Q |
198 |
tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg |
297 |
Q |
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||||||||||||||| ||| ||||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
9817448 |
tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg |
9817350 |
T |
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| Q |
298 |
atgggagga |
306 |
Q |
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||||||||| |
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| T |
9817349 |
atgggagga |
9817341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 11866 - 11788
Alignment:
| Q |
49 |
aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
127 |
Q |
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||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11866 |
aaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
11788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 334
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
| Q |
184 |
atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag |
283 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||| |
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| T |
11708 |
atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag |
11609 |
T |
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| Q |
284 |
aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca |
334 |
Q |
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|||| ||| |||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
11608 |
aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca |
11558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
| Q |
188 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
287 |
Q |
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||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| |
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| T |
11585 |
ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata |
11486 |
T |
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| Q |
288 |
agaaatgaggatgggagga |
306 |
Q |
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||||||||||||||||||| |
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| T |
11485 |
agaaatgaggatgggagga |
11467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 42778818 - 42778900
Alignment:
| Q |
47 |
tgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
130 |
Q |
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|||||||||||||||||||||||||||| ||| | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
42778818 |
tgaaaaaagtttggattaccttttttgctcaattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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