View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_30 (Length: 324)
Name: NF6870A_low_30
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_30 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 36 - 324
Target Start/End: Original strand, 48833706 - 48833994
Alignment:
| Q |
36 |
tggacatcatattttagagagactaacatatattatatatttatctatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctg |
135 |
Q |
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| T |
48833706 |
tggacatcatattttagagagactaacatatattatatatttatttatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctg |
48833805 |
T |
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| Q |
136 |
gtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccatacca |
235 |
Q |
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| T |
48833806 |
gtgttataatatcattggcatcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccatacca |
48833905 |
T |
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| Q |
236 |
agatccatctgatgaattttactttaagactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatc |
324 |
Q |
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| T |
48833906 |
agatccatctgatgaattttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacggtgtctttgatacctaatc |
48833994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 93 - 319
Target Start/End: Complemental strand, 48790434 - 48790208
Alignment:
| Q |
93 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
192 |
Q |
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| T |
48790434 |
tgggccaattggaagtttcatataggatttgatgtacgagctggtattgtaatatcccttgcatctatttatgatctagagaagcacatatatcgtagag |
48790335 |
T |
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| Q |
193 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
292 |
Q |
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| T |
48790334 |
tattatacaaagggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatt |
48790235 |
T |
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| Q |
293 |
tggtttgtcaacggtgtctttgatacc |
319 |
Q |
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| T |
48790234 |
tggtctatcgactgtgtctttgatacc |
48790208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 93 - 324
Target Start/End: Complemental strand, 15825965 - 15825734
Alignment:
| Q |
93 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
192 |
Q |
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| T |
15825965 |
tgggccaactggaagtttcatataggatttgatgtacgagctggtattataatatcacttgcatctatttacgaccttgaaaaacacaaatctcgtagag |
15825866 |
T |
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| Q |
193 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
292 |
Q |
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| T |
15825865 |
tattatacaaagggtatatttctgagttgtttgtgccataccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatt |
15825766 |
T |
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| Q |
293 |
tggtttgtcaacggtgtctttgatacctaatc |
324 |
Q |
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| T |
15825765 |
tggtcgatctactgtttctttgatacctaatc |
15825734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 90 - 324
Target Start/End: Complemental strand, 48816738 - 48816504
Alignment:
| Q |
90 |
agctgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgta |
189 |
Q |
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| T |
48816738 |
agctgggccaactggaagtttcatataggatttgatgtacgagctggtatagtgatatcacttgcatctatttacgatctagagaaacataagtctcgcc |
48816639 |
T |
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| Q |
190 |
gagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttgg |
289 |
Q |
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| T |
48816638 |
gtgtactctacaaaggctacatttccgagctatttgtgccttatcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttgg |
48816539 |
T |
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| Q |
290 |
atttggtttgtcaacggtgtctttgatacctaatc |
324 |
Q |
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| T |
48816538 |
atttggtctgtcaacggtgtctttgatacctaatc |
48816504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 162 - 324
Target Start/End: Complemental strand, 48808106 - 48807945
Alignment:
| Q |
162 |
tacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttacttta |
261 |
Q |
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| T |
48808106 |
tacgatatagagaaacacaagtttcgtcgtgtactctacaaagc-tacatttccgagctatttgtgccttatcaagacccaaccgaagaattttacttta |
48808008 |
T |
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| Q |
262 |
agactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatc |
324 |
Q |
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| T |
48808007 |
agactttctttgattctggagagtttggatttgccctgtcaacggtgtctttgatacctaatc |
48807945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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