View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_32 (Length: 312)
Name: NF6870A_low_32
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 16800664 - 16800504
Alignment:
| Q |
28 |
atgtaaaataagctttgaatttttaatataaagtgatcacataattgtatagttctaacttctacgagagnnnnnnntatggctgaatttcttcatatga |
127 |
Q |
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| T |
16800664 |
atgtaaaataagctttgaatttttaatataaagtgatcacataattgtatagttctaacttctacgagagaaaaaaatatggctgaatttcttcatatga |
16800565 |
T |
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| Q |
128 |
cctatgttatgatcatcttaatatttctatttctctctcttatcgacgccaaaggtaaaca |
188 |
Q |
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| T |
16800564 |
cctatgttatgatcatcttcatatttctatttctctctcttatcgacgccgaaggtaaaca |
16800504 |
T |
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Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 16800473 - 16800379
Alignment:
| Q |
218 |
ctagttttctacacaaactttcatcaaattttagtaacaattatattattctatatttaaatgatagcagttcatagatgtattgaatatactga |
312 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16800473 |
ctagttttctgcacaaactttcatcaaattttagtaacaattatattattctatatttaaatgatagcagttcatagatgtattgaatatactga |
16800379 |
T |
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