View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6870A_low_49 (Length: 273)
Name: NF6870A_low_49
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_49 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 74 - 273
Target Start/End: Original strand, 22738248 - 22738447
Alignment:
| Q |
74 |
aatatgactaaacttgcccctcttgaagaaacccttttgaatggtgaagctagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaa |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22738248 |
aatatgactaaacttgcccctcttgaagaatcccttttgaatggtgaagctagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaa |
22738347 |
T |
|
| Q |
174 |
tttcaaccagttattcaaatgctggatttttcagcattcttacattctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
22738348 |
gttcaaccagttattcaaatgctggatttttaagcattcttacattctcatggatgactccactaatagctttaggcaataaaaagactttaaaccatga |
22738447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 22720461 - 22720208
Alignment:
| Q |
24 |
aaaggttcctctattacaggtctctttgtt----attttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
119 |
Q |
| |
|
||||||| ||||||||||||||||||| || || ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
22720461 |
aaaggtttctctattacaggtctctttctttgtcatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
22720362 |
T |
|
| Q |
120 |
aagctagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
219 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22720361 |
aagatagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaagttcaaccagttattcaaatgctggattttttagcattcttacatt |
22720262 |
T |
|
| Q |
220 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
273 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
22720261 |
ctcatggatgactccactaatagctttaggcaataaaaagactttaaaccatga |
22720208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 22728795 - 22728542
Alignment:
| Q |
24 |
aaaggttcctctattacaggtctcttt----gttattttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
22728795 |
aaaggttcctctattacaggtctctttctttgttatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
22728696 |
T |
|
| Q |
120 |
aagctagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
219 |
Q |
| |
|
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
22728695 |
aaggtactgtaagcaacaacaattttgattccaaaaagacactaagaaatgaaatttcaaccagttatttgaatgctggatttttcagcattgttacatt |
22728596 |
T |
|
| Q |
220 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
273 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | |||||||| |||||||||||| |
|
|
| T |
22728595 |
ctcatggatgactccactaataactttaggaagtaaaaagactttagaccatga |
22728542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 24 - 273
Target Start/End: Original strand, 5590757 - 5591010
Alignment:
| Q |
24 |
aaaggttcctctattacaggtctcttt----gttattttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
5590757 |
aaaggttcctctattacaggtctctttctttgttatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
5590856 |
T |
|
| Q |
120 |
aagctagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
219 |
Q |
| |
|
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
5590857 |
aaggtactgtaagcaacaacaattttgattccaaaaagacactaagaaatgaaatttcaaccagttatttgaatgctggatttttcagcattgttacatt |
5590956 |
T |
|
| Q |
220 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
273 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | |||||||| |||||||||||| |
|
|
| T |
5590957 |
ctcatggatgactccactaataactttaggaagtaaaaagactttagaccatga |
5591010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University