View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6870A_low_50 (Length: 269)
Name: NF6870A_low_50
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_50 |
 | |
|
| [»] scaffold1075 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold1075 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 2537 - 2765
Alignment:
| Q |
41 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2537 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
2636 |
T |
|
| Q |
141 |
aattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
240 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2637 |
aattgttaaaaaatccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
2736 |
T |
|
| Q |
241 |
acttcaaggtctcttcgagcatcaccatg |
269 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |
|
|
| T |
2737 |
acttcaaggtctctacgagcatcaacatg |
2765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 41 - 269
Target Start/End: Complemental strand, 17006560 - 17006332
Alignment:
| Q |
41 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
140 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17006560 |
catcatgactcttcaacattcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatccggcactgtgatattctttaa |
17006461 |
T |
|
| Q |
141 |
aattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
240 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17006460 |
aattgttaaaaattccctcttacatttaccagtcaaagtaaaaattgtcggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
17006361 |
T |
|
| Q |
241 |
acttcaaggtctcttcgagcatcaccatg |
269 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
17006360 |
acttcaaggtctcttcgagcatcaacatg |
17006332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University