View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6870A_low_53 (Length: 263)
Name: NF6870A_low_53
Description: NF6870A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6870A_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 43 - 259
Target Start/End: Complemental strand, 30810542 - 30810322
Alignment:
| Q |
43 |
catgtgttcatggatatagccgcgagccattattgtgtcgatattatattataatcatttgttaaaagaaggactaatgaatattgaggatagaataagt |
142 |
Q |
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| T |
30810542 |
catgtgttcatggatatagccgcgagccattgttgtgtcaatattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagt |
30810443 |
T |
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| Q |
143 |
aaataaatgttga--agagtttttatagtgtaaaagaaatttgaaggtaactatgtatt--tatataatatagtagatgaagaggggtagacatacacat |
238 |
Q |
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| T |
30810442 |
aaataaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacat |
30810343 |
T |
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| Q |
239 |
ttaatgtgaggggagattgtg |
259 |
Q |
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| T |
30810342 |
ttaatgtgaggggagattgtg |
30810322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 30820209 - 30820136
Alignment:
| Q |
56 |
atatagccgcgagccattattgtgtcgatattatattataatcatttgttaaaagaaggactaatgaatattga |
129 |
Q |
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| T |
30820209 |
atatagccgtgagtcactgttgtgccaatattatattatagtcatttgttaaaagaaggaccaatcaatattga |
30820136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 30814989 - 30814946
Alignment:
| Q |
70 |
cattattgtgtcgatattatattataatcatttgttaaaagaag |
113 |
Q |
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| T |
30814989 |
cattgttgtgtcaatattatattataatcatttgttaaaagaag |
30814946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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